KEGG   PATHWAY: btn00020
Entry
btn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus thuringiensis HD-789
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btn00020  Citrate cycle (TCA cycle)
btn00020

Module
btn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btn00020]
btn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btn00020]
btn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btn00020]
btn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btn00020]
btn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btn00020]
Other DBs
GO: 0006099
Organism
Bacillus thuringiensis HD-789 [GN:btn]
Gene
BTF1_21515  citrate synthase [KO:K01647] [EC:2.3.3.1]
BTF1_08940  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
BTF1_16120  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BTF1_21510  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BTF1_04010  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BTF1_04005  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BTF1_10495  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTF1_19140  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTF1_11380  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTF1_18150  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTF1_16925  pyruvate synthase alpha chain [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BTF1_16920  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BTF1_17465  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BTF1_17470  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BTF1_06705  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BTF1_21130  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BTF1_21125  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BTF1_21135  succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
BTF1_00140  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BTF1_06300  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BTF1_21505  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTF1_12325  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BTF1_18035  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BTF1_22370  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BTF1_18165  pyruvate dehydrogenase complex E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BTF1_18160  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
BTF1_11385  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BTF1_18155  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btn00010  Glycolysis / Gluconeogenesis
btn00053  Ascorbate and aldarate metabolism
btn00061  Fatty acid biosynthesis
btn00071  Fatty acid degradation
btn00190  Oxidative phosphorylation
btn00220  Arginine biosynthesis
btn00250  Alanine, aspartate and glutamate metabolism
btn00280  Valine, leucine and isoleucine degradation
btn00350  Tyrosine metabolism
btn00470  D-Amino acid metabolism
btn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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