KEGG   PATHWAY: btx00020
Entry
btx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bartonella tribocorum BM1374166
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btx00020  Citrate cycle (TCA cycle)
btx00020

Module
btx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btx00020]
btx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btx00020]
btx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btx00020]
btx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btx00020]
Other DBs
GO: 0006099
Organism
Bartonella tribocorum BM1374166 [GN:btx]
Gene
BM1374166_00867  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
BM1374166_00110  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BM1374166_01314  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BM1374166_01889  hicd; Homoisocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BM1374166_02317  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BM1374166_02316  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BM1374166_02315  pdhD2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BM1374166_00805  pdhD1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BM1374166_02318  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BM1374166_02319  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BM1374166_02200  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BM1374166_02199  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BM1374166_02202  sdhC; succinate dehydrogenase cytochrome b560 subunit [KO:K00241]
BM1374166_02201  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BM1374166_01965  fumC_1; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BM1374166_02320  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BM1374166_00802  pdhA; pyruvate dehydrogenase subunit alpha [KO:K00161] [EC:1.2.4.1]
BM1374166_00803  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BM1374166_00804  pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btx00010  Glycolysis / Gluconeogenesis
btx00061  Fatty acid biosynthesis
btx00190  Oxidative phosphorylation
btx00220  Arginine biosynthesis
btx00250  Alanine, aspartate and glutamate metabolism
btx00280  Valine, leucine and isoleucine degradation
btx00470  D-Amino acid metabolism
btx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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