KEGG   PATHWAY: bvg00020
Entry
bvg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Beta vulgaris (sugar beet)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bvg00020  Citrate cycle (TCA cycle)
bvg00020

Module
bvg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bvg00020]
bvg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bvg00020]
bvg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bvg00020]
Other DBs
GO: 0006099
Organism
Beta vulgaris (sugar beet) [GN:bvg]
Gene
104903582  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
104904585  cit1; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
104890070  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
104889162  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
104888451  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
104897360  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
104891689  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
104906648  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
104887067  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
104902573  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
104903827  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
104897748  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial [KO:K00030] [EC:1.1.1.41]
104898674  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
104904371  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
104884603  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
104888407  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
104889141  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
104902563  succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
104895384  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
104895015  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
104902827  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
104895692  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
104902643  succinate dehydrogenase cytochrome b560 subunit [KO:K00236]
104895486  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
104905328  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
104887939  nr1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
104908004  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
104891410  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
104895842  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
104894044  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
104897815  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
104883630  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
104898034  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
104883853  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
104897495  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
104893881  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
104896518  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
104905451  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
104892739  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
104887207  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bvg00010  Glycolysis / Gluconeogenesis
bvg00053  Ascorbate and aldarate metabolism
bvg00061  Fatty acid biosynthesis
bvg00062  Fatty acid elongation
bvg00071  Fatty acid degradation
bvg00190  Oxidative phosphorylation
bvg00220  Arginine biosynthesis
bvg00250  Alanine, aspartate and glutamate metabolism
bvg00280  Valine, leucine and isoleucine degradation
bvg00350  Tyrosine metabolism
bvg00470  D-Amino acid metabolism
bvg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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