KEGG   PATHWAY: bvit00020
Entry
bvit00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brevundimonas vitisensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bvit00020  Citrate cycle (TCA cycle)
bvit00020

Module
bvit_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bvit00020]
bvit_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bvit00020]
bvit_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bvit00020]
bvit_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bvit00020]
bvit_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bvit00020]
Other DBs
GO: 0006099
Organism
Brevundimonas vitisensis [GN:bvit]
Gene
JIP62_02400  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JIP62_08775  citrate synthase [KO:K01647] [EC:2.3.3.1]
JIP62_10355  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JIP62_05980  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JIP62_07415  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JIP62_07420  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JIP62_01975  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JIP62_06795  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JIP62_09440  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JIP62_07405  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JIP62_07385  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JIP62_11620  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JIP62_11615  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JIP62_11630  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
JIP62_11625  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
JIP62_04385  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JIP62_09025  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JIP62_03650  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
JIP62_02000  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JIP62_01995  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
JIP62_01985  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bvit00010  Glycolysis / Gluconeogenesis
bvit00053  Ascorbate and aldarate metabolism
bvit00061  Fatty acid biosynthesis
bvit00071  Fatty acid degradation
bvit00190  Oxidative phosphorylation
bvit00220  Arginine biosynthesis
bvit00250  Alanine, aspartate and glutamate metabolism
bvit00280  Valine, leucine and isoleucine degradation
bvit00350  Tyrosine metabolism
bvit00470  D-Amino acid metabolism
bvit00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system