KEGG   PATHWAY: bxi00020
Entry
bxi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus xiamenensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bxi00020  Citrate cycle (TCA cycle)
bxi00020

Module
bxi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bxi00020]
bxi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bxi00020]
bxi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bxi00020]
bxi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bxi00020]
bxi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bxi00020]
Other DBs
GO: 0006099
Organism
Bacillus xiamenensis [GN:bxi]
Gene
BK049_17685  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
BK049_14240  citrate synthase [KO:K01647] [EC:2.3.3.1]
BK049_18140  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BK049_14245  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BK049_17610  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BK049_17615  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BK049_05585  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BK049_02125  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BK049_01275  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BK049_16200  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BK049_00535  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BK049_00540  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BK049_14505  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BK049_14510  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BK049_14500  succinate dehydrogenase [KO:K00241]
BK049_12240  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BK049_14250  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BK049_01185  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BK049_13600  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BK049_01290  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BK049_01285  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BK049_05590  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BK049_02130  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BK049_01280  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bxi00010  Glycolysis / Gluconeogenesis
bxi00053  Ascorbate and aldarate metabolism
bxi00061  Fatty acid biosynthesis
bxi00071  Fatty acid degradation
bxi00190  Oxidative phosphorylation
bxi00220  Arginine biosynthesis
bxi00250  Alanine, aspartate and glutamate metabolism
bxi00280  Valine, leucine and isoleucine degradation
bxi00350  Tyrosine metabolism
bxi00470  D-Amino acid metabolism
bxi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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