KEGG   PATHWAY: bxn00630
Entry
bxn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium xenonodulans
Class
Metabolism; Carbohydrate metabolism
Pathway map
bxn00630  Glyoxylate and dicarboxylate metabolism
bxn00630

Module
bxn_M00012  Glyoxylate cycle [PATH:bxn00630]
bxn_M00621  Glycine cleavage system [PATH:bxn00630]
bxn_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bxn00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium xenonodulans [GN:bxn]
Gene
I3J27_08400  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
I3J27_01310  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
I3J27_06145  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
I3J27_15845  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
I3J27_35590  malate synthase G [KO:K01638] [EC:2.3.3.9]
I3J27_01940  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I3J27_02920  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
I3J27_02925  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
I3J27_20520  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
I3J27_01880  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
I3J27_02705  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_03645  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_04865  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_05975  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_08265  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_10995  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_15660  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_15800  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_22870  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
I3J27_26880  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_32375  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_32400  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_33770  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
I3J27_35935  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
I3J27_02710  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
I3J27_20840  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
I3J27_14650  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
I3J27_22545  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
I3J27_32435  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
I3J27_14645  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
I3J27_22970  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
I3J27_32440  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
I3J27_33155  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
I3J27_11635  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
I3J27_11645  methylmalonyl-CoA mutase subunit beta [KO:K01847] [EC:5.4.99.2]
I3J27_14655  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
I3J27_32420  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
I3J27_32425  methylmalonyl-CoA mutase subunit beta [KO:K01847] [EC:5.4.99.2]
I3J27_05670  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
I3J27_05680  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
I3J27_05685  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
I3J27_29045  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
I3J27_00300  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
I3J27_14465  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
I3J27_29070  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
I3J27_31810  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
I3J27_14800  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
I3J27_19915  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
I3J27_22255  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
I3J27_09175  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
I3J27_09180  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
I3J27_02345  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
I3J27_26200  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
I3J27_26210  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
I3J27_37605  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
I3J27_17045  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
I3J27_21085  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
I3J27_21710  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
I3J27_24810  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
I3J27_24800  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
I3J27_01975  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I3J27_14345  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I3J27_14640  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I3J27_20240  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I3J27_24805  gcvH; glycine cleavage system protein GcvH [KO:K02437]
I3J27_12230  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
I3J27_12235  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
I3J27_12240  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
I3J27_35990  glycerate kinase [KO:K11529] [EC:2.7.1.165]
I3J27_10900  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
I3J27_28295  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
I3J27_15655  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
I3J27_12295  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
I3J27_12025  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
I3J27_07415  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
I3J27_12035  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
I3J27_14440  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
I3J27_07410  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
I3J27_12040  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
I3J27_14445  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
I3J27_12045  formate dehydrogenase subunit gamma [KO:K00127]
I3J27_14450  formate dehydrogenase subunit gamma [KO:K00127]
I3J27_16925  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
I3J27_25765  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
I3J27_38150  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
I3J27_26710  formamidase [KO:K01455] [EC:3.5.1.49]
I3J27_12185  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
I3J27_12180  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bxn00010  Glycolysis / Gluconeogenesis
bxn00020  Citrate cycle (TCA cycle)
bxn00030  Pentose phosphate pathway
bxn00053  Ascorbate and aldarate metabolism
bxn00071  Fatty acid degradation
bxn00230  Purine metabolism
bxn00250  Alanine, aspartate and glutamate metabolism
bxn00260  Glycine, serine and threonine metabolism
bxn00620  Pyruvate metabolism
bxn00710  Carbon fixation by Calvin cycle
bxn00750  Vitamin B6 metabolism
bxn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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