KEGG   PATHWAY: byi00030
Entry
byi00030                    Pathway                                
Name
Pentose phosphate pathway - Burkholderia sp. YI23
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
byi00030  Pentose phosphate pathway
byi00030

Module
byi_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:byi00030]
byi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:byi00030]
byi_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:byi00030]
byi_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:byi00030]
byi_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:byi00030]
Other DBs
GO: 0006098
Organism
Burkholderia sp. YI23 [GN:byi]
Gene
BYI23_A012220  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BYI23_B013490  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BYI23_B007300  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BYI23_A007220  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BYI23_A007230  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
BYI23_A008140  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
BYI23_A011480  6-phosphogluconate dehydrogenase-like protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BYI23_B012130  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BYI23_A023110  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BYI23_B014350  transketolase [KO:K00615] [EC:2.2.1.1]
BYI23_D007450  transketolase domain-containing protein [KO:K00615] [EC:2.2.1.1]
BYI23_D007460  Transketolase central region [KO:K00615] [EC:2.2.1.1]
BYI23_C006640  transketolase domain-containing protein [KO:K00615] [EC:2.2.1.1]
BYI23_C006650  Transketolase central region [KO:K00615] [EC:2.2.1.1]
BYI23_C006690  transketolase [KO:K00615] [EC:2.2.1.1]
BYI23_A011470  transketolase [KO:K00615] [EC:2.2.1.1]
BYI23_A022120  transketolase [KO:K00615] [EC:2.2.1.1]
BYI23_A007970  transaldolase [KO:K00616] [EC:2.2.1.2]
BYI23_A016000  ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
BYI23_B006860  putative phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
BYI23_B002360  Phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
BYI23_C012170  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
BYI23_A012620  ribokinase [KO:K00852] [EC:2.7.1.15]
BYI23_C012200  ribokinase [KO:K00852] [EC:2.7.1.15]
BYI23_A020350  phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
BYI23_B014830  phnN; phosphonate metabolism protein/1,5-bisphosphokinase, PhnN [KO:K05774] [EC:2.7.4.23]
BYI23_A002480  Ribose-Phosphate Pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BYI23_A021950  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
BYI23_A021940  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BYI23_B007160  short-chain dehydrogenase/reductase [KO:K00034] [EC:1.1.1.47]
BYI23_D013260  membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
BYI23_D003050  SMP-30/Gluconolaconase/LRE domain protein [KO:K01053] [EC:3.1.1.17]
BYI23_C003800  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
BYI23_C005760  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
BYI23_C005950  gluconolactonase [KO:K01053] [EC:3.1.1.17]
BYI23_B002640  gluconolactonase [KO:K01053] [EC:3.1.1.17]
BYI23_C012410  SMP-30/Gluconolaconase/LRE domain protein [KO:K01053] [EC:3.1.1.17]
BYI23_A014830  Gluconate 2-dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BYI23_A019240  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BYI23_A021920  carbohydrate kinase [KO:K00851] [EC:2.7.1.12]
BYI23_A014850  pfkB; PfkB domain protein [KO:K00874] [EC:2.7.1.45]
BYI23_A015170  putative fructokinase-like protein [KO:K00874] [EC:2.7.1.45]
BYI23_D015380  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
BYI23_C005550  hypothetical protein [KO:K11529] [EC:2.7.1.165]
BYI23_D009890  fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
BYI23_A004700  fructose-bisphosphate aldolase, class II, Calvin cycle subtype [KO:K01624] [EC:4.1.2.13]
BYI23_B014360  fructose-bisphosphate aldolase, class II, Calvin cycle subtype [KO:K01624] [EC:4.1.2.13]
BYI23_A006740  inositol phosphatase/fructose-16-bisphosphatase [KO:K03841] [EC:3.1.3.11]
BYI23_B014330  Inositol phosphatase/fructose-16-bisphosphatase [KO:K01086] [EC:3.1.3.11 3.1.3.37]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
byi00010  Glycolysis / Gluconeogenesis
byi00040  Pentose and glucuronate interconversions
byi00052  Galactose metabolism
byi00230  Purine metabolism
byi00240  Pyrimidine metabolism
byi00340  Histidine metabolism
byi00630  Glyoxylate and dicarboxylate metabolism
byi00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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