KEGG   PATHWAY: caen00020
Entry
caen00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Caenibius sp. WL
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
caen00020  Citrate cycle (TCA cycle)
caen00020

Module
caen_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:caen00020]
caen_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:caen00020]
caen_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:caen00020]
caen_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:caen00020]
caen_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:caen00020]
Other DBs
GO: 0006099
Organism
Caenibius sp. WL [GN:caen]
Gene
K5X80_09790  citrate synthase [KO:K01647] [EC:2.3.3.1]
K5X80_16590  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K5X80_08495  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K5X80_08305  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K5X80_08300  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K5X80_08295  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K5X80_10295  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K5X80_12850  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K5X80_09395  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K5X80_09400  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K5X80_08310  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K5X80_01965  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K5X80_09335  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K5X80_09605  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K5X80_09325  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
K5X80_09330  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
K5X80_02400  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K5X80_06520  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K5X80_08315  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K5X80_07515  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
K5X80_10055  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
K5X80_10060  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
K5X80_10300  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
K5X80_12865  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
caen00010  Glycolysis / Gluconeogenesis
caen00053  Ascorbate and aldarate metabolism
caen00061  Fatty acid biosynthesis
caen00071  Fatty acid degradation
caen00190  Oxidative phosphorylation
caen00220  Arginine biosynthesis
caen00250  Alanine, aspartate and glutamate metabolism
caen00280  Valine, leucine and isoleucine degradation
caen00350  Tyrosine metabolism
caen00470  D-Amino acid metabolism
caen00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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