KEGG   PATHWAY: calo00020
Entry
calo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Calothrix sp. PCC 7507
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
calo00020  Citrate cycle (TCA cycle)
calo00020

Module
calo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:calo00020]
calo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:calo00020]
Other DBs
GO: 0006099
Organism
Calothrix sp. PCC 7507 [GN:calo]
Gene
Cal7507_2382  citrate synthase [KO:K01659] [EC:2.3.3.5]
Cal7507_4078  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Cal7507_6116  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Cal7507_5463  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Cal7507_2577  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Cal7507_2576  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Cal7507_2832  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Cal7507_5115  succinate dehydrogenase subunit C [KO:K00241]
Cal7507_2202  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Cal7507_5998  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Cal7507_0918  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
Cal7507_4616  Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Cal7507_5433  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
calo00010  Glycolysis / Gluconeogenesis
calo00053  Ascorbate and aldarate metabolism
calo00061  Fatty acid biosynthesis
calo00071  Fatty acid degradation
calo00190  Oxidative phosphorylation
calo00220  Arginine biosynthesis
calo00250  Alanine, aspartate and glutamate metabolism
calo00280  Valine, leucine and isoleucine degradation
calo00350  Tyrosine metabolism
calo00470  D-Amino acid metabolism
calo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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