KEGG   PATHWAY: camu00020
Entry
camu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cyclobacterium amurskyense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
camu00020  Citrate cycle (TCA cycle)
camu00020

Module
camu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:camu00020]
camu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:camu00020]
camu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:camu00020]
camu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:camu00020]
camu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:camu00020]
Other DBs
GO: 0006099
Organism
Cyclobacterium amurskyense [GN:camu]
Gene
CA2015_4533  Citrate synthase [KO:K01647] [EC:2.3.3.1]
CA2015_0100  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CA2015_0238  Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CA2015_1794  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CA2015_0371  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CA2015_2429  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
CA2015_2428  Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CA2015_2965  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CA2015_2427  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CA2015_3125  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CA2015_0080  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CA2015_0081  Thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CA2015_0012  Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
CA2015_4459  Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
CA2015_0806  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CA2015_2640  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CA2015_0805  Succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CA2015_2639  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00240] [EC:1.3.5.1]
CA2015_0807  Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
CA2015_0938  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CA2015_2326  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CA2015_4814  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CA2015_2281  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CA2015_0359  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
CA2015_0609  Acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
camu00010  Glycolysis / Gluconeogenesis
camu00053  Ascorbate and aldarate metabolism
camu00061  Fatty acid biosynthesis
camu00071  Fatty acid degradation
camu00190  Oxidative phosphorylation
camu00220  Arginine biosynthesis
camu00250  Alanine, aspartate and glutamate metabolism
camu00280  Valine, leucine and isoleucine degradation
camu00350  Tyrosine metabolism
camu00470  D-Amino acid metabolism
camu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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