KEGG   PATHWAY: cao00020
Entry
cao00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cellulophaga algicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cao00020  Citrate cycle (TCA cycle)
cao00020

Module
cao_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cao00020]
cao_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cao00020]
cao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cao00020]
cao_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cao00020]
cao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cao00020]
Other DBs
GO: 0006099
Organism
Cellulophaga algicola [GN:cao]
Gene
Celal_0595  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Celal_2442  aconitase [KO:K01681] [EC:4.2.1.3]
Celal_2440  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Celal_0013  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Celal_3005  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Celal_2026  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Celal_2027  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Celal_2421  Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
Celal_2871  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Celal_3632  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Celal_4163  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Celal_0332  Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
Celal_1598  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Celal_1597  ferredoxin [KO:K00240] [EC:1.3.5.1]
Celal_1599  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Celal_3422  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Celal_0509  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Celal_0519  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Celal_2340  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Celal_1029  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Celal_0748  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Celal_2152  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
Celal_0747  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cao00010  Glycolysis / Gluconeogenesis
cao00053  Ascorbate and aldarate metabolism
cao00061  Fatty acid biosynthesis
cao00071  Fatty acid degradation
cao00190  Oxidative phosphorylation
cao00220  Arginine biosynthesis
cao00250  Alanine, aspartate and glutamate metabolism
cao00280  Valine, leucine and isoleucine degradation
cao00350  Tyrosine metabolism
cao00470  D-Amino acid metabolism
cao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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