KEGG   PATHWAY: capf00020
Entry
capf00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Capnocytophaga sp. FDAARGOS_737
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
capf00020  Citrate cycle (TCA cycle)
capf00020

Module
capf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:capf00020]
capf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:capf00020]
capf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:capf00020]
capf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:capf00020]
capf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:capf00020]
Other DBs
GO: 0006099
Organism
Capnocytophaga sp. FDAARGOS_737 [GN:capf]
Gene
FOC45_03465  citrate synthase [KO:K01647] [EC:2.3.3.1]
FOC45_03455  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FOC45_03460  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FOC45_08425  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FOC45_02505  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
FOC45_08415  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FOC45_07765  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FOC45_05195  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FOC45_07240  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FOC45_02120  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FOC45_08675  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FOC45_08670  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FOC45_08680  succinate dehydrogenase [KO:K00241]
FOC45_07265  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FOC45_07995  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FOC45_06510  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FOC45_06420  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FOC45_00135  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FOC45_06425  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
capf00010  Glycolysis / Gluconeogenesis
capf00061  Fatty acid biosynthesis
capf00190  Oxidative phosphorylation
capf00220  Arginine biosynthesis
capf00250  Alanine, aspartate and glutamate metabolism
capf00280  Valine, leucine and isoleucine degradation
capf00470  D-Amino acid metabolism
capf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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