KEGG   PATHWAY: capn00020
Entry
capn00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Capnocytophaga endodontalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
capn00020  Citrate cycle (TCA cycle)
capn00020

Module
capn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:capn00020]
capn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:capn00020]
capn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:capn00020]
capn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:capn00020]
capn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:capn00020]
Other DBs
GO: 0006099
Organism
Capnocytophaga endodontalis [GN:capn]
Gene
CBG49_00440  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CBG49_00430  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CBG49_00435  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CBG49_06440  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CBG49_13135  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
CBG49_06455  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CBG49_07080  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CBG49_10145  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CBG49_09535  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CBG49_12950  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CBG49_06660  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CBG49_06655  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CBG49_06665  succinate dehydrogenase [KO:K00241]
CBG49_09050  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CBG49_07775  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CBG49_07910  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CBG49_10290  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CBG49_03050  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CBG49_10285  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
capn00010  Glycolysis / Gluconeogenesis
capn00061  Fatty acid biosynthesis
capn00190  Oxidative phosphorylation
capn00220  Arginine biosynthesis
capn00250  Alanine, aspartate and glutamate metabolism
capn00280  Valine, leucine and isoleucine degradation
capn00470  D-Amino acid metabolism
capn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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