KEGG   PATHWAY: capq00020
Entry
capq00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Capnocytophaga sp. H2931
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
capq00020  Citrate cycle (TCA cycle)
capq00020

Module
capq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:capq00020]
capq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:capq00020]
capq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:capq00020]
capq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:capq00020]
capq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:capq00020]
Other DBs
GO: 0006099
Organism
Capnocytophaga sp. H2931 [GN:capq]
Gene
CGC52_08515  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CGC52_06995  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CGC52_07840  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CGC52_09410  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CGC52_09430  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CGC52_09180  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
CGC52_01575  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGC52_02375  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CGC52_00775  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CGC52_02275  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CGC52_02975  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CGC52_02965  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CGC52_02980  succinate dehydrogenase [KO:K00241]
CGC52_00785  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CGC52_04375  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CGC52_10140  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CGC52_10225  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CGC52_08265  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CGC52_10220  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
capq00010  Glycolysis / Gluconeogenesis
capq00053  Ascorbate and aldarate metabolism
capq00061  Fatty acid biosynthesis
capq00071  Fatty acid degradation
capq00190  Oxidative phosphorylation
capq00220  Arginine biosynthesis
capq00250  Alanine, aspartate and glutamate metabolism
capq00280  Valine, leucine and isoleucine degradation
capq00350  Tyrosine metabolism
capq00470  D-Amino acid metabolism
capq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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