KEGG   PATHWAY: cart00020
Entry
cart00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cryobacterium arcticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cart00020  Citrate cycle (TCA cycle)
cart00020

Module
cart_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cart00020]
cart_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cart00020]
cart_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cart00020]
cart_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cart00020]
cart_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cart00020]
Other DBs
GO: 0006099
Organism
Cryobacterium arcticum [GN:cart]
Gene
PA27867_3405  citrate synthase [KO:K01647] [EC:2.3.3.1]
PA27867_1018  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PA27867_1911  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PA27867_2865  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PA27867_0698  alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
PA27867_1702  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PA27867_2879  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
PA27867_2880  Succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PA27867_0588  Fumarate reductase [KO:K00239] [EC:1.3.5.1]
PA27867_0587  Succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
PA27867_0590  Succinate dehydrogenase cytochrome b subunit [KO:K00241]
PA27867_0589  Succinate dehydrogenase [KO:K00242]
PA27867_2332  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
PA27867_0833  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PA27867_0459  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PA27867_1562  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PA27867_0567  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
PA27867_1676  Pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
PA27867_1701  dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cart00010  Glycolysis / Gluconeogenesis
cart00053  Ascorbate and aldarate metabolism
cart00061  Fatty acid biosynthesis
cart00071  Fatty acid degradation
cart00190  Oxidative phosphorylation
cart00220  Arginine biosynthesis
cart00250  Alanine, aspartate and glutamate metabolism
cart00280  Valine, leucine and isoleucine degradation
cart00350  Tyrosine metabolism
cart00470  D-Amino acid metabolism
cart00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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