KEGG   PATHWAY: cat00020
Entry
cat00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Croceibacter atlanticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cat00020  Citrate cycle (TCA cycle)
cat00020

Module
cat_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cat00020]
cat_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cat00020]
cat_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cat00020]
cat_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cat00020]
cat_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cat00020]
Other DBs
GO: 0006099
Organism
Croceibacter atlanticus [GN:cat]
Gene
CA2559_05880  citrate synthase [KO:K01647] [EC:2.3.3.1]
CA2559_00945  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CA2559_06770  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
CA2559_02000  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
CA2559_07590  lipoamide acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CA2559_02005  2-oxoglutarate dehydrogenase complex, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CA2559_05240  lipoamide acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CA2559_12463  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CA2559_06220  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CA2559_08196  succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CA2559_08536  Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
CA2559_04695  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
CA2559_04690  succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CA2559_04700  Succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
CA2559_09838  FumC [KO:K01679] [EC:4.2.1.2]
CA2559_08746  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CA2559_10083  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CA2559_01655  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CA2559_05455  pyruvate dehydrogenase complex, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
CA2559_13273  dihydrolipoamide acetyltransferase [KO:K00162] [EC:1.2.4.1]
CA2559_05450  Dihydrolipoamide acetyltransferase component (E2) of pyruvatedehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cat00010  Glycolysis / Gluconeogenesis
cat00053  Ascorbate and aldarate metabolism
cat00061  Fatty acid biosynthesis
cat00071  Fatty acid degradation
cat00190  Oxidative phosphorylation
cat00220  Arginine biosynthesis
cat00250  Alanine, aspartate and glutamate metabolism
cat00280  Valine, leucine and isoleucine degradation
cat00350  Tyrosine metabolism
cat00470  D-Amino acid metabolism
cat00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system