KEGG   PATHWAY: caua00020
Entry
caua00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Carassius auratus (goldfish)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
caua00020  Citrate cycle (TCA cycle)
caua00020

Module
caua_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:caua00020]
caua_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:caua00020]
caua_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:caua00020]
caua_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:caua00020]
caua_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:caua00020]
Other DBs
GO: 0006099
Organism
Carassius auratus (goldfish) [GN:caua]
Gene
113065564  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
113074182  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
113041530  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
113056277  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
113046940  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
113047232  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
113056047  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
113051712  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
113111721  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
113061623  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
113077873  isocitrate dehydrogenase [NADP] cytoplasmic-like isoform X1 [KO:K00031] [EC:1.1.1.42]
113108771  isocitrate dehydrogenase [NADP] cytoplasmic-like isoform X1 [KO:K00031] [EC:1.1.1.42]
113053230  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
113091621  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
113067001  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
113043410  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
113068940  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
113069107  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
113064099  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
113038769  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
113107331  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
113096111  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
113070689  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
113110223  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
113110348  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
113060434  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
113116932  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
113066987  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
113043389  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
113095142  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
113069938  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
113092548  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113055171  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113050853  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113111021  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113111022  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113119908  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
113062609  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
113076629  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
113068921  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
113045612  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
113039352  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
113040348  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
113120989  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
113045083  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like isoform X1 [KO:K00236]
113049958  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial-like [KO:K00237]
113115102  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like isoform X1 [KO:K00237]
113058422  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
113087501  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial-like [KO:K00237]
113055881  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
113111359  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
113044009  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
113044118  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
113117482  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
113046895  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
113054426  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
113109942  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
113106607  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
113038514  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
113064144  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
113066092  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
113042325  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
113050105  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
113081964  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
113066212  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
113042466  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
113048780  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
113048782  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
113091397  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
113091800  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
113091801  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
113079625  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
113079626  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
113079627  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
113080099  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
113064703  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
113038595  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
113064301  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
caua00010  Glycolysis / Gluconeogenesis
caua00053  Ascorbate and aldarate metabolism
caua00061  Fatty acid biosynthesis
caua00062  Fatty acid elongation
caua00071  Fatty acid degradation
caua00190  Oxidative phosphorylation
caua00220  Arginine biosynthesis
caua00250  Alanine, aspartate and glutamate metabolism
caua00280  Valine, leucine and isoleucine degradation
caua00350  Tyrosine metabolism
caua00470  D-Amino acid metabolism
caua00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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