KEGG   PATHWAY: cave00020
Entry
cave00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Corylus avellana (European hazelnut)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cave00020  Citrate cycle (TCA cycle)
cave00020

Module
cave_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cave00020]
cave_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cave00020]
cave_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cave00020]
Other DBs
GO: 0006099
Organism
Corylus avellana (European hazelnut) [GN:cave]
Gene
132165943  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
132180947  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
132181406  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
132166227  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
132179086  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
132170275  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
132170276  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
132181512  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
132180412  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
132170981  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
132173875  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
132173883  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
132180433  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
132181361  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial-like [KO:K00031] [EC:1.1.1.42]
132173850  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
132166993  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
132172307  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
132161882  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
132186260  uncharacterized protein LOC132186260 [KO:K00164] [EC:1.2.4.2]
132176142  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
132182385  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
132172141  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
132174562  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
132162791  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
132163379  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
132184456  succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
132166375  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
132187002  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
132166482  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
132183354  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
132170931  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
132187764  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
132177094  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
132184707  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
132175571  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
132170769  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
132175157  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
132189978  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
132170407  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
132188266  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
132177093  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
132179254  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
132172408  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
132187568  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
132178406  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
132183802  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
132184194  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cave00010  Glycolysis / Gluconeogenesis
cave00053  Ascorbate and aldarate metabolism
cave00061  Fatty acid biosynthesis
cave00062  Fatty acid elongation
cave00071  Fatty acid degradation
cave00190  Oxidative phosphorylation
cave00220  Arginine biosynthesis
cave00250  Alanine, aspartate and glutamate metabolism
cave00280  Valine, leucine and isoleucine degradation
cave00350  Tyrosine metabolism
cave00470  D-Amino acid metabolism
cave00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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