KEGG   PATHWAY: cbk00240
Entry
cbk00240                    Pathway                                
Name
Pyrimidine metabolism - Clostridium botulinum B Eklund 17B (NRP)
Class
Metabolism; Nucleotide metabolism
Pathway map
cbk00240  Pyrimidine metabolism
cbk00240

Module
cbk_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:cbk00240]
cbk_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cbk00240]
cbk_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cbk00240]
cbk_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:cbk00240]
Other DBs
GO: 0006220 0006213
Organism
Clostridium botulinum B Eklund 17B (NRP) [GN:cbk]
Gene
CLL_A0824  ATP domain protein [KO:K01955] [EC:6.3.5.5]
CLL_A0071  carB; carbamoyl-phosphate synthase, large subunit [KO:K01955] [EC:6.3.5.5]
CLL_A0070  carA; carbamoyl-phosphate synthase, small subunit [KO:K01956] [EC:6.3.5.5]
CLL_A2581  pyrB; aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
CLL_A2580  aspartate carbamoyltransferase regulatory chain [KO:K00610]
CLL_A2579  pyrC; dihydroorotase, multifunctional complex type [KO:K01465] [EC:3.5.2.3]
CLL_A2576  dihydroorotate dehydrogenase, catalytic subunit [KO:K17828] [EC:1.3.1.14]
CLL_A0629  dihydroorotate dehydrogenase family protein [KO:K17828] [EC:1.3.1.14]
CLL_A2577  pyrK; dihydroorotate dehydrogenase, electron transfer subunit [KO:K02823]
CLL_A2575  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
CLL_A2578  pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
CLL_A1260  pyrH; UMP kinase [KO:K09903] [EC:2.7.4.22]
CLL_A0992  nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
CLL_A0561  maf; septum formation protein Maf [KO:K06287] [EC:3.6.1.-]
CLL_A0476  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
CLL_A1804  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
CLL_A3110  putative threonyl-tRNA synthetase/uridine kinase [KO:K00876] [EC:2.7.1.48]
CLL_A1056  udk; uridine kinase [KO:K00876] [EC:2.7.1.48]
CLL_A1838  2,3-cyclic-nucleotide 2'phosphodiesterase [KO:K01081] [EC:3.1.3.5]
CLL_A2858  nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
CLL_A2994  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
CLL_A1580  udp; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
CLL_A0487  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
CLL_A2431  pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase [KO:K02825] [EC:2.4.2.9]
CLL_A0092  5'-nucleotidase family protein [KO:K01119] [EC:3.1.4.16 3.1.3.6]
CLL_A0735  pdp; pyrimidine-nucleoside phosphorylase [KO:K00756] [EC:2.4.2.2]
CLL_A2970  cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
CLL_A0127  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
CLL_A2648  dcd; dCTP deaminase [KO:K01494] [EC:3.5.4.13]
CLL_A0284  ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
CLL_A0285  ribonucleoside-diphosphate reductase, beta subunit [KO:K00526] [EC:1.17.4.1]
CLL_A0488  dCMP deaminase [KO:K01493] [EC:3.5.4.12]
CLL_A1347  dTMP kinase [KO:K00943] [EC:2.7.4.9]
CLL_A0198  dTMP kinase [KO:K00943] [EC:2.7.4.9]
CLL_A0763  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
CLL_A0480  tdk; thymidine kinase [KO:K00857] [EC:2.7.1.21]
CLL_A1349  thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
CLL_A3448  thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
CLL_A2318  hypothetical oxidoreductase YeiT [KO:K17722] [EC:1.3.1.1]
CLL_A2317  dihydroorotate dehydrogenase family protein [KO:K17723] [EC:1.3.1.1]
CLL_A0634  hydA; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
cbk00030  Pentose phosphate pathway
cbk00220  Arginine biosynthesis
cbk00250  Alanine, aspartate and glutamate metabolism
cbk00280  Valine, leucine and isoleucine degradation
cbk00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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