KEGG   PATHWAY: cbp00020
Entry
cbp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chryseobacterium balustinum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cbp00020  Citrate cycle (TCA cycle)
cbp00020

Module
cbp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cbp00020]
cbp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cbp00020]
cbp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cbp00020]
cbp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cbp00020]
cbp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cbp00020]
Other DBs
GO: 0006099
Organism
Chryseobacterium balustinum [GN:cbp]
Gene
EB354_17880  citrate synthase [KO:K01647] [EC:2.3.3.1]
EB354_21210  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EB354_21215  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EB354_11940  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EB354_06525  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EB354_06530  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EB354_06610  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
EB354_04605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EB354_06190  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EB354_02875  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EB354_00705  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EB354_09385  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EB354_22350  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EB354_09390  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EB354_22355  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EB354_09380  succinate dehydrogenase cytochrome b subunit [KO:K00241]
EB354_22345  succinate dehydrogenase cytochrome b subunit [KO:K00241]
EB354_19175  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EB354_19180  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EB354_04175  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EB354_15905  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
EB354_11220  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EB354_18295  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EB354_07100  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
EB354_01380  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
EB354_07105  biotin/lipoyl-binding protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cbp00010  Glycolysis / Gluconeogenesis
cbp00053  Ascorbate and aldarate metabolism
cbp00061  Fatty acid biosynthesis
cbp00071  Fatty acid degradation
cbp00190  Oxidative phosphorylation
cbp00220  Arginine biosynthesis
cbp00250  Alanine, aspartate and glutamate metabolism
cbp00280  Valine, leucine and isoleucine degradation
cbp00350  Tyrosine metabolism
cbp00470  D-Amino acid metabolism
cbp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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