KEGG   PATHWAY: cbre00020
Entry
cbre00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium breve
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cbre00020  Citrate cycle (TCA cycle)
cbre00020

Module
cbre_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cbre00020]
cbre_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cbre00020]
cbre_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cbre00020]
cbre_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cbre00020]
cbre_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cbre00020]
Other DBs
GO: 0006099
Organism
Corynebacterium breve [GN:cbre]
Gene
QP027_02890  citrate synthase [KO:K01647] [EC:2.3.3.1]
QP027_05670  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QP027_02000  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QP027_04085  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
QP027_00845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QP027_09325  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
QP027_00860  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QP027_00865  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QP027_00855  succinate dehydrogenase cytochrome b subunit [KO:K00241]
QP027_03710  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QP027_08595  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QP027_06895  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QP027_02115  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
QP027_10395  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
QP027_07875  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QP027_07685  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
QP027_04945  transketolase C-terminal domain-containing protein [KO:K00169] [EC:1.2.7.1]
QP027_04940  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
QP027_04950  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cbre00010  Glycolysis / Gluconeogenesis
cbre00061  Fatty acid biosynthesis
cbre00071  Fatty acid degradation
cbre00190  Oxidative phosphorylation
cbre00220  Arginine biosynthesis
cbre00250  Alanine, aspartate and glutamate metabolism
cbre00280  Valine, leucine and isoleucine degradation
cbre00350  Tyrosine metabolism
cbre00470  D-Amino acid metabolism
cbre00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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