KEGG   PATHWAY: ccab00020
Entry
ccab00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chryseobacterium camelliae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccab00020  Citrate cycle (TCA cycle)
ccab00020

Module
ccab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccab00020]
ccab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccab00020]
ccab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccab00020]
ccab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccab00020]
ccab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccab00020]
Other DBs
GO: 0006099
Organism
Chryseobacterium camelliae [GN:ccab]
Gene
PFY12_11395  citrate synthase [KO:K01647] [EC:2.3.3.1]
PFY12_08315  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PFY12_08310  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PFY12_03350  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PFY12_01005  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PFY12_01010  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PFY12_01065  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
PFY12_02825  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PFY12_03855  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PFY12_05190  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PFY12_06455  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PFY12_07225  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PFY12_07220  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PFY12_07230  succinate dehydrogenase cytochrome b subunit [KO:K00241]
PFY12_08655  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PFY12_08660  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PFY12_04970  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PFY12_12920  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
PFY12_11045  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
PFY12_01500  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PFY12_05830  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PFY12_01505  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccab00010  Glycolysis / Gluconeogenesis
ccab00053  Ascorbate and aldarate metabolism
ccab00061  Fatty acid biosynthesis
ccab00071  Fatty acid degradation
ccab00190  Oxidative phosphorylation
ccab00220  Arginine biosynthesis
ccab00250  Alanine, aspartate and glutamate metabolism
ccab00280  Valine, leucine and isoleucine degradation
ccab00350  Tyrosine metabolism
ccab00470  D-Amino acid metabolism
ccab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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