KEGG   PATHWAY: ccae00515
Entry
ccae00515                   Pathway                                
Name
Mannose type O-glycan biosynthesis - Cyanistes caeruleus (blue tit)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
ccae00515  Mannose type O-glycan biosynthesis
ccae00515

Other DBs
GO: 0035269
Organism
Cyanistes caeruleus (blue tit) [GN:ccae]
Gene
111929944  POMT2; protein O-mannosyl-transferase 2 isoform X1 [KO:K00728] [EC:2.4.1.109]
111922377  POMT1; protein O-mannosyl-transferase 1 isoform X1 [KO:K00728] [EC:2.4.1.109]
111933102  POMGNT1; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [KO:K09666] [EC:2.4.1.-]
111941228  B4GALT1; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
111933140  B4GALT2; beta-1,4-galactosyltransferase 2 isoform X1 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
111939118  beta-1,4-galactosyltransferase 3-like [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
111933145  ST3GAL3; CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X1 [KO:K00781] [EC:2.4.3.6]
111939130  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like isoform X1 [KO:K00735] [EC:2.4.1.135]
111939336  B3GAT1; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1 [KO:K00735] [EC:2.4.1.135]
111926021  B3GAT2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 [KO:K10157] [EC:2.4.1.135]
111922146  CHST10; carbohydrate sulfotransferase 10 isoform X1 [KO:K09674] [EC:2.8.2.-]
111925714  FUT9; alpha-(1,3)-fucosyltransferase 9 isoform X1 [KO:K03663] [EC:2.4.1.152]
111924543  FUT4; alpha-(1,3)-fucosyltransferase 4 [KO:K07632] [EC:2.4.1.-]
111937261  MGAT5B; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B [KO:K09661] [EC:2.4.1.-]
111923526  POMGNT2; protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 [KO:K18207] [EC:2.4.1.312]
111927067  B3GALNT2; UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 [KO:K09654] [EC:2.4.1.313]
111927790  POMK; protein O-mannose kinase [KO:K17547] [EC:2.7.1.183]
111924281  ISPD; D-ribitol-5-phosphate cytidylyltransferase isoform X1 [KO:K21031] [EC:2.7.7.40]
111941885  FKTN; fukutin [KO:K19872] [EC:2.7.8.-]
111942658  FKRP; fukutin-related protein isoform X1 [KO:K19873] [EC:2.7.8.-]
111932408  RXYLT1; UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase isoform X1 [KO:K21052] [EC:2.4.2.61]
111930188  LARGE2; LARGE xylosyl- and glucuronyltransferase 2 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
111935729  LARGE xylosyl- and glucuronyltransferase 1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
111931277  LARGE xylosyl- and glucuronyltransferase 1-like [KO:K09668] [EC:2.4.2.- 2.4.1.-]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026   
G13027   
G13028   
G13082   
G13083   
G13084  O-Mannose core M1
G13085   
G13086  O-Mannose core M2
G13087   
G13088   
G13089   
G13090   
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093   
G13094   
G13095   
G13096   
G13097   
G13098   
G13099   
G13100   
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
ccae00510  N-Glycan biosynthesis
KO pathway
ko00515   
LinkDB

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