KEGG   PATHWAY: ccav00020
Entry
ccav00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cynara cardunculus var. scolymus (artichoke)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccav00020  Citrate cycle (TCA cycle)
ccav00020

Module
ccav_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccav00020]
ccav_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccav00020]
ccav_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccav00020]
ccav_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccav00020]
ccav_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccav00020]
Other DBs
GO: 0006099
Organism
Cynara cardunculus var. scolymus (artichoke) [GN:ccav]
Gene
112524219  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
112518954  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
112527441  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
112522667  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
112527626  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
112520814  ATP-citrate synthase beta chain protein 2-like isoform X1 [KO:K01648] [EC:2.3.3.8]
112501422  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
112500995  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
112500894  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112510616  aconitate hydratase 1 isoform X1 [KO:K01681] [EC:4.2.1.3]
112511677  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
112515246  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
112511957  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
112525164  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
112521267  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
112520949  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
112519639  3-isopropylmalate dehydrogenase, chloroplastic-like [KO:K00030] [EC:1.1.1.41]
112500931  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
112507168  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
112516554  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
112500353  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
112521565  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
112503495  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
112507058  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
112520783  dihydrolipoyl dehydrogenase, mitochondrial-like isoform X1 [KO:K00382] [EC:1.8.1.4]
112527453  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
112505750  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
112518186  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
112512524  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
112515488  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
112515382  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
112523343  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
112513368  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
112518254  uncharacterized protein LOC112518254 [KO:K00236]
112503576  uncharacterized protein LOC112503576 [KO:K25801]
112506483  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
112504187  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
112522646  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
112529199  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
112500275  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
112500161  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
112512106  malate dehydrogenase, glyoxysomal-like isoform X1 [KO:K00026] [EC:1.1.1.37]
112511289  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
112516541  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
112513635  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
112514407  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
112527408  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
112518374  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
112526557  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
112523267  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
112526704  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
112524619  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
112522738  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
112528758  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
112508813  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
112525224  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
112521970  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
112516499  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
112527809  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccav00010  Glycolysis / Gluconeogenesis
ccav00053  Ascorbate and aldarate metabolism
ccav00061  Fatty acid biosynthesis
ccav00062  Fatty acid elongation
ccav00071  Fatty acid degradation
ccav00190  Oxidative phosphorylation
ccav00220  Arginine biosynthesis
ccav00250  Alanine, aspartate and glutamate metabolism
ccav00280  Valine, leucine and isoleucine degradation
ccav00350  Tyrosine metabolism
ccav00470  D-Amino acid metabolism
ccav00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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