KEGG   PATHWAY: ccaz00020
Entry
ccaz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Couchioplanes caeruleus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccaz00020  Citrate cycle (TCA cycle)
ccaz00020

Module
ccaz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccaz00020]
ccaz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccaz00020]
ccaz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccaz00020]
ccaz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccaz00020]
ccaz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccaz00020]
Other DBs
GO: 0006099
Organism
Couchioplanes caeruleus [GN:ccaz]
Gene
COUCH_35865  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
COUCH_37380  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
COUCH_16955  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
COUCH_16960  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
COUCH_17970  citrate synthase [KO:K01647] [EC:2.3.3.1]
COUCH_28815  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
COUCH_34630  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
COUCH_06620  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
COUCH_30400  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
COUCH_32875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
COUCH_03865  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
COUCH_03860  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
COUCH_34675  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
COUCH_34680  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
COUCH_05090  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
COUCH_29905  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
COUCH_05085  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
COUCH_29910  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
COUCH_29900  succinate dehydrogenase cytochrome b subunit [KO:K00241]
COUCH_02950  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
COUCH_02970  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
COUCH_34645  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
COUCH_04685  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
COUCH_30835  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
COUCH_30405  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccaz00010  Glycolysis / Gluconeogenesis
ccaz00053  Ascorbate and aldarate metabolism
ccaz00061  Fatty acid biosynthesis
ccaz00071  Fatty acid degradation
ccaz00190  Oxidative phosphorylation
ccaz00220  Arginine biosynthesis
ccaz00250  Alanine, aspartate and glutamate metabolism
ccaz00280  Valine, leucine and isoleucine degradation
ccaz00350  Tyrosine metabolism
ccaz00470  D-Amino acid metabolism
ccaz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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