KEGG   PATHWAY: ccc00020
Entry
ccc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter coli CVM N29710
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccc00020  Citrate cycle (TCA cycle)
ccc00020

Module
ccc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccc00020]
ccc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccc00020]
ccc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccc00020]
Other DBs
GO: 0006099
Organism
Campylobacter coli CVM N29710 [GN:ccc]
Gene
G157_08270  citrate synthase [KO:K01647] [EC:2.3.3.1]
G157_07340  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
G157_04735  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
G157_06010  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
G157_05985  oorA; 2-oxoglutarate-acceptor oxidoreductase subunit OorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
G157_05980  oorB; 2-oxoglutarate-acceptor oxidoreductase subunit OorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
G157_05975  oorC; 2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
G157_05990  oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
G157_05995  succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
G157_06000  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
G157_06595  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
G157_06590  frdB; fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
G157_06600  fumarate reductase cytochrome b-556 subunit [KO:K25996]
G157_02005  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
G157_06005  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
G157_06675  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
G157_03790  acetyl-CoA carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
G157_04125  oxaloacetate decarboxylase, alpha subunit, putative [KO:K01960] [EC:6.4.1.1]
G157_04130  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
G157_01510  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccc00010  Glycolysis / Gluconeogenesis
ccc00061  Fatty acid biosynthesis
ccc00190  Oxidative phosphorylation
ccc00220  Arginine biosynthesis
ccc00250  Alanine, aspartate and glutamate metabolism
ccc00280  Valine, leucine and isoleucine degradation
ccc00350  Tyrosine metabolism
ccc00470  D-Amino acid metabolism
ccc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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