KEGG   PATHWAY: ccm00020
Entry
ccm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Capnocytophaga canimorsus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccm00020  Citrate cycle (TCA cycle)
ccm00020

Module
ccm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccm00020]
ccm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccm00020]
ccm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccm00020]
ccm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccm00020]
ccm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccm00020]
Other DBs
GO: 0006099
Organism
Capnocytophaga canimorsus [GN:ccm]
Gene
Ccan_13500  Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
Ccan_19190  Citrate hydro-lyase [KO:K01681] [EC:4.2.1.3]
Ccan_12080  Oxalosuccinate decarboxylase [KO:K00031] [EC:1.1.1.42]
Ccan_02880  Alpha-ketoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
Ccan_07050  Branched-chain alpha-keto acid dehydrogenase complex component E2 [KO:K00658] [EC:2.3.1.61]
Ccan_01940  2-oxoglutarate dehydrogenase complex component E2 [KO:K00658] [EC:2.3.1.61]
Ccan_05180  E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes [KO:K00382] [EC:1.8.1.4]
Ccan_08480  Glycine cleavage system L protein 1 [KO:K00382] [EC:1.8.1.4]
Ccan_03260  Vegetative protein 239 [KO:K01902] [EC:6.2.1.5]
Ccan_07840  Succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
Ccan_02510  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Ccan_02480  Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Ccan_02520  Succinate dehydrogenase (Or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Ccan_08810  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Ccan_13970  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Ccan_15480  Phosphoenolpyruvate carboxylase [KO:K01610] [EC:4.1.1.49]
Ccan_09200  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Ccan_06140  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
Ccan_09190  M2 antigen complex 70 kDa subunit [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccm00010  Glycolysis / Gluconeogenesis
ccm00053  Ascorbate and aldarate metabolism
ccm00061  Fatty acid biosynthesis
ccm00190  Oxidative phosphorylation
ccm00220  Arginine biosynthesis
ccm00250  Alanine, aspartate and glutamate metabolism
ccm00280  Valine, leucine and isoleucine degradation
ccm00350  Tyrosine metabolism
ccm00470  D-Amino acid metabolism
ccm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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