KEGG   PATHWAY: ccof00020
Entry
ccof00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter coli FB1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccof00020  Citrate cycle (TCA cycle)
ccof00020

Module
ccof_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ccof00020]
ccof_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccof00020]
ccof_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccof00020]
Other DBs
GO: 0006099
Organism
Campylobacter coli FB1 [GN:ccof]
Gene
VC76_08350  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
VC76_01425  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
VC76_04045  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
VC76_02770  icd2; Isocitrate dehydrogenase [NADP] 2 [KO:K00031] [EC:1.1.1.42]
VC76_02795  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
VC76_02800  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
VC76_02805  2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
VC76_02790  hydA_1; Periplasmic [Fe] hydrogenase large subunit [KO:K00176] [EC:1.2.7.3]
VC76_02785  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
VC76_02780  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
VC76_02140  frdA; Fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
VC76_02145  frdB; Fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
VC76_02135  frdC; Fumarate reductase cytochrome b subunit [KO:K25996]
VC76_06845  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
VC76_02775  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VC76_02060  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
VC76_05045  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01959] [EC:6.4.1.1]
VC76_04700  cfiA; 2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
VC76_04695  pckA; Phosphoenolpyruvate carboxykinase:ATP [KO:K01610] [EC:4.1.1.49]
VC76_07285  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccof00010  Glycolysis / Gluconeogenesis
ccof00061  Fatty acid biosynthesis
ccof00190  Oxidative phosphorylation
ccof00220  Arginine biosynthesis
ccof00250  Alanine, aspartate and glutamate metabolism
ccof00280  Valine, leucine and isoleucine degradation
ccof00350  Tyrosine metabolism
ccof00470  D-Amino acid metabolism
ccof00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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