KEGG   PATHWAY: ccot00020
Entry
ccot00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Capsulimonas corticalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccot00020  Citrate cycle (TCA cycle)
ccot00020

Module
ccot_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccot00020]
ccot_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccot00020]
ccot_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccot00020]
ccot_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccot00020]
Other DBs
GO: 0006099
Organism
Capsulimonas corticalis [GN:ccot]
Gene
CCAX7_003740  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CCAX7_18480  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CCAX7_18490  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CCAX7_43720  citZ; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
CCAX7_51800  acn; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
CCAX7_20020  leuB_1; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CCAX7_38990  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CCAX7_39000  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CCAX7_38290  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCAX7_47570  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
CCAX7_47590  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
CCAX7_47530  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CCAX7_47520  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CCAX7_47540  succinate dehydrogenase cytochrome B558 [KO:K00241]
CCAX7_44250  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CCAX7_003460  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CCAX7_58990  pckA2; phosphoenolpyruvate carboxykinase [ATP] 2 [KO:K01610] [EC:4.1.1.49]
CCAX7_44930  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
CCAX7_31030  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CCAX7_31040  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CCAX7_31050  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccot00010  Glycolysis / Gluconeogenesis
ccot00053  Ascorbate and aldarate metabolism
ccot00061  Fatty acid biosynthesis
ccot00190  Oxidative phosphorylation
ccot00220  Arginine biosynthesis
ccot00250  Alanine, aspartate and glutamate metabolism
ccot00280  Valine, leucine and isoleucine degradation
ccot00350  Tyrosine metabolism
ccot00470  D-Amino acid metabolism
ccot00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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