KEGG   PATHWAY: cdb00020
Entry
cdb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium diphtheriae BH8
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cdb00020  Citrate cycle (TCA cycle)
cdb00020

Module
cdb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cdb00020]
cdb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cdb00020]
cdb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cdb00020]
cdb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cdb00020]
cdb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cdb00020]
Other DBs
GO: 0006099
Organism
Corynebacterium diphtheriae BH8 [GN:cdb]
Gene
CDBH8_0765  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CDBH8_1261  acn; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CDBH8_0589  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CDBH8_0972  sucA; 2-oxoglutarate dehydrogenase, E1 subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CDBH8_0308  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDBH8_1878  cat1; succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CDBH8_0311  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CDBH8_0312  sdhC; succinate dehydrogenase reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CDBH8_0310  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00241]
CDBH8_0888  fum; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CDBH8_1759  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CDBH8_1489  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CDBH8_0604  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CDBH8_2151  pck; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CDBH8_1661  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
CDBH8_1625  sucB; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cdb00010  Glycolysis / Gluconeogenesis
cdb00053  Ascorbate and aldarate metabolism
cdb00061  Fatty acid biosynthesis
cdb00071  Fatty acid degradation
cdb00190  Oxidative phosphorylation
cdb00220  Arginine biosynthesis
cdb00250  Alanine, aspartate and glutamate metabolism
cdb00280  Valine, leucine and isoleucine degradation
cdb00350  Tyrosine metabolism
cdb00470  D-Amino acid metabolism
cdb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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