KEGG   PATHWAY: cdl02010
Entry
cdl02010                    Pathway                                
Name
ABC transporters - Clostridioides difficile R20291
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
cdl02010  ABC transporters
cdl02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Clostridioides difficile R20291 [GN:cdl]
Gene
CDR20291_1333  ssuA; putative aliphatic sulfonates ABC transporter, substrate-binding lipoprotein [KO:K15553]
CDR20291_2824  ABC transporter, substrate-binding protein [KO:K15553]
CDR20291_1331  ssuC; putative aliphatic sulfonate ABC transporter, permease protein [KO:K15554]
CDR20291_2826  putative ABC transporter, permease protein [KO:K15554]
CDR20291_2825  ABC transporter, ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CDR20291_1332  ssuB; putative aliphatic sulfonates ABC transporter, ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CDR20291_2200  ABC transporter, substrate-binding protein0 [KO:K02020]
CDR20291_0798  modA; putative molybdenum ABC transporter, substrate-binding protein [KO:K02020]
CDR20291_2201  modB; ABC transporter, permease protein [KO:K02018]
CDR20291_0799  modB; putative molybdenum ABC transporter, permease protein [KO:K02018]
CDR20291_0800  modC; putative molybdenum ABC transporter, ATP-binding protein [KO:K02017] [EC:7.3.2.5]
CDR20291_3363  putative iron ABC transporter, solute-binding lipoprotein [KO:K02012]
CDR20291_2983  abc-type fe3+ transport system periplasmic component-like protein precursor [KO:K02012]
CDR20291_3362  putative iron ABC transporter, solute-binding protein [KO:K02012]
CDR20291_2786  ABC transporter, substrate-binding protein [KO:K02012]
CDR20291_3364  putative iron ABC transporter, permease protein [KO:K02011]
CDR20291_2980  probable abc transporter permease protein y4fn [KO:K02011]
CDR20291_2784  ABC transporter, permease protein [KO:K02011]
CDR20291_3365  putative iron ABC transporter, ATP-binding protein [KO:K02010] [EC:7.2.2.7]
CDR20291_2785  ABC transporter, ATP-binding protein [KO:K02010] [EC:7.2.2.7]
CDR20291_2981  spermidine/putrescine abc transporter atp-binding subunit [KO:K02010] [EC:7.2.2.7]
CDR20291_0883  potD; spermidine/putrescine ABC transporter, substrate-binding lipoprotein [KO:K11069]
CDR20291_0882  potC; putative spermidine/putrescine ABC transporter, permease protein [KO:K11070]
CDR20291_0881  potB; spermidine/putrescine ABC transporter, permease protein [KO:K11071]
CDR20291_0880  potA; spermidine/putrescine ABC transporter, ATP-binding protein [KO:K11072] [EC:7.6.2.11]
CDR20291_3075  putative osmoprotectant ABC transporter, substrate-binding/permease protein [KO:K05845 K05846]
CDR20291_0831  opuCC; glycine betaine/carnitine/choline ABC transporter, substrate-binding protein [KO:K05845 K05846]
CDR20291_0830  opuCA; glycine betaine/carnitine/choline ABC transporter, ATP-binding protein [KO:K05847] [EC:7.6.2.9]
CDR20291_3074  putative osmoprotectant acid ABC transporter, ATP-binding protein [KO:K05847] [EC:7.6.2.9]
CDR20291_2349  ABC transporter, ATP-binding protein [KO:K10112] [EC:7.5.2.-]
CDR20291_0493  putative outer membrane lipoprotein [KO:K07335]
CDR20291_0494  putative outer membrane lipoprotein [KO:K07335]
CDR20291_1487  putative ribose ABC transporter, substrate-binding lipoprotein [KO:K10439]
CDR20291_0303  rbsB; D-ribose ABC transporter, substrate-binding protein [KO:K10439]
CDR20291_0305  rbsC; ribose ABC transporter, permease protein [KO:K10440]
CDR20291_1486  putative ribose ABC transporter, permease protein [KO:K10440]
CDR20291_0304  rbsA; ribose ABC transporter, ATP-binding protein [KO:K10441] [EC:7.5.2.7]
CDR20291_1485  putative ribose ABC transporter, ATP-binding protein [KO:K10441] [EC:7.5.2.7]
CDR20291_3236  ABC transporter, solute-binding protein [KO:K05813]
CDR20291_3238  ABC transporter, permease protein [KO:K05814]
CDR20291_3237  ABC transporter, permease protein [KO:K05815]
CDR20291_3239  ABC transporter, ATP-binding protein [KO:K05816] [EC:7.6.2.10]
CDR20291_3129  putative phosphate ABC transporter, substrate-binding protein [KO:K02040]
CDR20291_3121  putative phosphate ABC transporter, permease protein [KO:K02037]
CDR20291_3120  putative phosphateABC transporter, permease protein [KO:K02038]
CDR20291_3119  phoT; phosphate import ABC transporter, ATP-binding protein [KO:K02036] [EC:7.3.2.1]
CDR20291_2083  probable amino-acid ABC transporter, substrate-binding protein [KO:K16961]
CDR20291_2080  probable amino-acid ABC transporter, substrate-binding protein [KO:K16961]
CDR20291_2082  probable amino-acid ABC transporter, permease protein [KO:K16962]
CDR20291_2081  probable amino-acid ABC transporter, permease protein [KO:K16962]
CDR20291_2078  probable amino-acid ABC transporter, ATP-binding protein [KO:K16963]
CDR20291_0678  amino acid ABC transporter, substrate-binding protein [KO:K23059]
CDR20291_0679  amino acid ABC transporter, permease protein [KO:K17077]
CDR20291_0680  amino acid ABC transporter, ATP-binding protein [KO:K23060] [EC:7.4.2.1]
CDR20291_1341  metQ; putative D-methionine ABC transporter, substrate-binding lipoprotein [KO:K02073]
CDR20291_1551  putative lipoprotein [KO:K02073]
CDR20291_1340  metI; putative D-methionine ABC transporter, permease protein [KO:K02072]
CDR20291_1339  metN; D-methionine ABC transporter, ATP-binding protein [KO:K02071]
CDR20291_0330  cbiN; cobalt transport protein [KO:K02009]
CDR20291_0329  cbiM; putative cobalt transport protein [KO:K02007]
CDR20291_0331  cbiQ; cobalt transport protein [KO:K02008]
CDR20291_0332  cbiO; cobalt ABC transporter, ATP-binding protein [KO:K02006]
CDR20291_2806  bioY; putative biotin synthase [KO:K03523]
CDR20291_0100  ABC transporter, permease protein [KO:K16785]
CDR20291_0098  ABC transporter, ATP-binding protein [KO:K16786] [EC:7.-.-.-]
CDR20291_0099  ABC transporter, ATP-binding protein [KO:K16787] [EC:7.-.-.-]
CDR20291_1513  putative sodium extrusion ABC transporter, permease protein [KO:K09696]
CDR20291_1512  putative sodium extrusion ABC transporter, ATP-binding protein [KO:K09697] [EC:7.2.2.4]
CDR20291_0322  putative ABC transporter, permease protein [KO:K19310]
CDR20291_0753  putative lantibiotic ABC transporter, permease protein [KO:K19310]
CDR20291_1751  putative lantibiotic abc transporter, permease protein [KO:K19310]
CDR20291_1752  putative lantibiotic abc transporter, permease protein [KO:K19310]
CDR20291_0321  putative ABC transporter, permease protein [KO:K19310]
CDR20291_0754  putative lantibiotic ABC transporter, permease protein [KO:K19310]
CDR20291_0323  ABC transporter, ATP-binding protein [KO:K19309]
CDR20291_0752  putative lantibiotic ABC transporter, ATP-binding protein [KO:K19309]
CDR20291_1750  putative lantibiotic abc transporter,atp-binding protein [KO:K19309]
CDR20291_2889  putative ABC transporter, permease protein [KO:K11632]
CDR20291_1382  putative ABC transporter, permease protein [KO:K11632]
CDR20291_1381  ABC transporter, ATP-binding protein [KO:K11631]
CDR20291_2890  ABC transporter, ATP-binding protein [KO:K11631]
CDR20291_0589  d3; putative lantibiotic ABC transporter, peremase protein [KO:K20460]
CDR20291_0588  d2; putative lantibiotic ABC transporter, permease protein [KO:K20461]
CDR20291_0590  d4; putative lantibiotic ABC transporter, ATP-binding protein [KO:K20459]
CDR20291_0421  spaE; putative lantibiotic ABC transporter, permease protein [KO:K20491]
CDR20291_1192  putative lantibiotic ABC transporter, permease protein [KO:K20491]
CDR20291_0422  spaG; putative lantibiotic ABC transporter, permease protein [KO:K20492]
CDR20291_1193  putative lantibiotic ABC transporter, permease protein [KO:K20492]
CDR20291_0420  spaF; putative lantibiotic ABC transporter, ATP-binding protein [KO:K20490]
CDR20291_1191  putative lantibiotic ABC transporter, ATP-binding protein [KO:K20490]
CDR20291_3472  putative abc transporter, permease protein [KO:K16905]
CDR20291_1649  putative ABC transporter, permease protein [KO:K16905]
CDR20291_3059  putative ABC transporter, permease protein [KO:K16905]
CDR20291_3471  putative abc transporter, permease protein [KO:K16906]
CDR20291_1648  putative ABC transporter, permease protein [KO:K16906]
CDR20291_3060  putative ABC transporter, permease protein [KO:K16906]
CDR20291_1647  ABC transporter, ATP-binding protein [KO:K16907] [EC:7.6.2.-]
CDR20291_3470  abc transporter, atp-binding protein [KO:K16907] [EC:7.6.2.-]
CDR20291_3061  ABC transporter, ATP-binding protein [KO:K16907] [EC:7.6.2.-]
CDR20291_2707  ABC transporter, ATP-binding/permease protein [KO:K18887]
CDR20291_0873  putative ABC transporter, permease/ATP-binding protein [KO:K18887]
CDR20291_2118  ABC transporter, ATP-binding/permease protein [KO:K18887]
CDR20291_1321  ABC transporter, ATP-binding/permease protein [KO:K18887]
CDR20291_2706  ABC transporter, ATP-binding/permease protein [KO:K18888]
CDR20291_0874  putative ABC transporter, permease/ATP-binding protein [KO:K18888]
CDR20291_2117  ABC transporter, ATP-binding/permease protein [KO:K18888]
CDR20291_1322  ABC transporter, ATP-binding/permease protein [KO:K18888]
CDR20291_2480  putative antibiotic resistance ABC transporter, ATP-binding protein [KO:K18231]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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