KEGG   PATHWAY: cdon00020
Entry
cdon00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cellulomonas dongxiuzhuiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cdon00020  Citrate cycle (TCA cycle)
cdon00020

Module
cdon_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cdon00020]
cdon_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cdon00020]
cdon_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cdon00020]
cdon_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cdon00020]
Other DBs
GO: 0006099
Organism
Cellulomonas dongxiuzhuiae [GN:cdon]
Gene
KKR89_04855  citrate synthase [KO:K01647] [EC:2.3.3.1]
KKR89_08365  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KKR89_12570  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KKR89_05940  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KKR89_10645  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KKR89_12610  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KKR89_12615  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KKR89_04950  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KKR89_04945  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KKR89_09475  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KKR89_04960  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KKR89_09485  succinate dehydrogenase cytochrome b subunit [KO:K00241]
KKR89_04955  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
KKR89_04705  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KKR89_12565  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KKR89_09440  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KKR89_09635  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KKR89_10855  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KKR89_10650  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cdon00010  Glycolysis / Gluconeogenesis
cdon00053  Ascorbate and aldarate metabolism
cdon00061  Fatty acid biosynthesis
cdon00071  Fatty acid degradation
cdon00190  Oxidative phosphorylation
cdon00220  Arginine biosynthesis
cdon00250  Alanine, aspartate and glutamate metabolism
cdon00280  Valine, leucine and isoleucine degradation
cdon00350  Tyrosine metabolism
cdon00470  D-Amino acid metabolism
cdon00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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