KEGG   PATHWAY: cdw00020
Entry
cdw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium diphtheriae PW8
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cdw00020  Citrate cycle (TCA cycle)
cdw00020

Module
cdw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cdw00020]
cdw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cdw00020]
cdw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cdw00020]
cdw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cdw00020]
cdw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cdw00020]
Other DBs
GO: 0006099
Organism
Corynebacterium diphtheriae PW8 [GN:cdw]
Gene
CDPW8_0780  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CDPW8_1261  acn; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CDPW8_0631  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CDPW8_0966  sucA; 2-oxoglutarate dehydrogenase, E1 subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CDPW8_0369  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDPW8_1873  cat1; succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CDPW8_0372  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CDPW8_0373  sdhC; succinate dehydrogenase reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CDPW8_0371  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00241]
CDPW8_0904  fum; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CDPW8_1780  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CDPW8_1482  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CDPW8_0646  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CDPW8_2142  pck; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CDPW8_1679  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
CDPW8_1628  sucB; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cdw00010  Glycolysis / Gluconeogenesis
cdw00053  Ascorbate and aldarate metabolism
cdw00061  Fatty acid biosynthesis
cdw00071  Fatty acid degradation
cdw00190  Oxidative phosphorylation
cdw00220  Arginine biosynthesis
cdw00250  Alanine, aspartate and glutamate metabolism
cdw00280  Valine, leucine and isoleucine degradation
cdw00350  Tyrosine metabolism
cdw00470  D-Amino acid metabolism
cdw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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