KEGG   PATHWAY: celz00020
Entry
celz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cellulomonas shaoxiangyii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
celz00020  Citrate cycle (TCA cycle)
celz00020

Module
celz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:celz00020]
celz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:celz00020]
celz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:celz00020]
celz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:celz00020]
Other DBs
GO: 0006099
Organism
Cellulomonas shaoxiangyii [GN:celz]
Gene
E5225_13065  citrate synthase [KO:K01647] [EC:2.3.3.1]
E5225_09690  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
E5225_04930  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E5225_12005  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
E5225_07250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E5225_04885  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E5225_04880  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E5225_12970  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E5225_02370  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
E5225_12975  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E5225_12960  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E5225_12965  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E5225_13205  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E5225_00360  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E5225_04935  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E5225_08380  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
E5225_07065  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E5225_07245  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
celz00010  Glycolysis / Gluconeogenesis
celz00053  Ascorbate and aldarate metabolism
celz00061  Fatty acid biosynthesis
celz00071  Fatty acid degradation
celz00190  Oxidative phosphorylation
celz00220  Arginine biosynthesis
celz00250  Alanine, aspartate and glutamate metabolism
celz00280  Valine, leucine and isoleucine degradation
celz00350  Tyrosine metabolism
celz00470  D-Amino acid metabolism
celz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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