PATHWAY: cfir01100 Help Entry cfir01100                   Pathway                                 Name Metabolic pathways - Cytobacillus firmus Class BRITE hierarchy Pathway map cfir01100   Metabolic pathways Module cfir_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:cfir01100] cfir_M00002   Glycolysis, core module involving three-carbon compounds [PATH:cfir01100] cfir_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cfir01100] cfir_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cfir01100] cfir_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:cfir01100] cfir_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cfir01100] cfir_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cfir01100] cfir_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:cfir01100] cfir_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfir01100] cfir_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cfir01100] cfir_M00012   Glyoxylate cycle [PATH:cfir01100] cfir_M00015   Proline biosynthesis, glutamate => proline [PATH:cfir01100] cfir_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:cfir01100] cfir_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:cfir01100] cfir_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:cfir01100] cfir_M00021   Cysteine biosynthesis, serine => cysteine [PATH:cfir01100] cfir_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:cfir01100] cfir_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:cfir01100] cfir_M00026   Histidine biosynthesis, PRPP => histidine [PATH:cfir01100] cfir_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:cfir01100] cfir_M00034   Methionine salvage pathway [PATH:cfir01100] cfir_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:cfir01100] cfir_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:cfir01100] cfir_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:cfir01100] cfir_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:cfir01100] cfir_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cfir01100] cfir_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cfir01100] cfir_M00082   Fatty acid biosynthesis, initiation [PATH:cfir01100] cfir_M00083   Fatty acid biosynthesis, elongation [PATH:cfir01100] cfir_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:cfir01100] cfir_M00087   beta-Oxidation [PATH:cfir01100] cfir_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:cfir01100] cfir_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:cfir01100] cfir_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:cfir01100] cfir_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:cfir01100] cfir_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:cfir01100] cfir_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:cfir01100] cfir_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:cfir01100] cfir_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:cfir01100] cfir_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:cfir01100] cfir_M00135   GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:cfir01100] cfir_M00140   C1-unit interconversion, prokaryotes [PATH:cfir01100] cfir_M00151   Cytochrome bc1 complex respiratory unit [PATH:cfir01100] cfir_M00155   Cytochrome c oxidase, prokaryotes [PATH:cfir01100] cfir_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:cfir01100] cfir_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:cfir01100] cfir_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfir01100] cfir_M00345   Formaldehyde assimilation, ribulose monophosphate pathway [PATH:cfir01100] cfir_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:cfir01100] cfir_M00416   Cytochrome aa3-600 menaquinol oxidase [PATH:cfir01100] cfir_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:cfir01100] cfir_M00525   Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:cfir01100] cfir_M00527   Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:cfir01100] cfir_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:cfir01100] cfir_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:cfir01100] cfir_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:cfir01100] cfir_M00580   Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:cfir01100] cfir_M00609   Cysteine biosynthesis, methionine => cysteine [PATH:cfir01100] cfir_M00621   Glycine cleavage system [PATH:cfir01100] cfir_M00793   dTDP-L-rhamnose biosynthesis [PATH:cfir01100] cfir_M00844   Arginine biosynthesis, ornithine => arginine [PATH:cfir01100] cfir_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:cfir01100] cfir_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:cfir01100] cfir_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:cfir01100] cfir_M00883   Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:cfir01100] cfir_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:cfir01100] cfir_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:cfir01100] cfir_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:cfir01100] cfir_M00924   Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:cfir01100] cfir_M00926   Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:cfir01100] cfir_M00970   Proline degradation, proline => glutamate [PATH:cfir01100] cfir_M00972   Proline metabolism [PATH:cfir01100] Organism Cytobacillus firmus [GN:cfir] Related pathway cfir00010   Glycolysis / Gluconeogenesis cfir00020   Citrate cycle (TCA cycle) cfir00030   Pentose phosphate pathway cfir00040   Pentose and glucuronate interconversions cfir00051   Fructose and mannose metabolism cfir00052   Galactose metabolism cfir00053   Ascorbate and aldarate metabolism cfir00061   Fatty acid biosynthesis cfir00071   Fatty acid degradation cfir00130   Ubiquinone and other terpenoid-quinone biosynthesis cfir00190   Oxidative phosphorylation cfir00220   Arginine biosynthesis cfir00230   Purine metabolism cfir00240   Pyrimidine metabolism cfir00250   Alanine, aspartate and glutamate metabolism cfir00260   Glycine, serine and threonine metabolism cfir00261   Monobactam biosynthesis cfir00270   Cysteine and methionine metabolism cfir00280   Valine, leucine and isoleucine degradation cfir00290   Valine, leucine and isoleucine biosynthesis cfir00300   Lysine biosynthesis cfir00310   Lysine degradation cfir00311   Penicillin and cephalosporin biosynthesis cfir00330   Arginine and proline metabolism cfir00332   Carbapenem biosynthesis cfir00340   Histidine metabolism cfir00350   Tyrosine metabolism cfir00360   Phenylalanine metabolism cfir00362   Benzoate degradation cfir00365   Furfural degradation cfir00380   Tryptophan metabolism cfir00400   Phenylalanine, tyrosine and tryptophan biosynthesis cfir00401   Novobiocin biosynthesis cfir00410   beta-Alanine metabolism cfir00430   Taurine and hypotaurine metabolism cfir00450   Selenocompound metabolism cfir00460   Cyanoamino acid metabolism cfir00470   D-Amino acid metabolism cfir00480   Glutathione metabolism cfir00500   Starch and sucrose metabolism cfir00520   Amino sugar and nucleotide sugar metabolism cfir00521   Streptomycin biosynthesis cfir00523   Polyketide sugar unit biosynthesis cfir00525   Acarbose and validamycin biosynthesis cfir00540   Lipopolysaccharide biosynthesis cfir00541   O-Antigen nucleotide sugar biosynthesis cfir00542   O-Antigen repeat unit biosynthesis cfir00543   Exopolysaccharide biosynthesis cfir00550   Peptidoglycan biosynthesis cfir00552   Teichoic acid biosynthesis cfir00561   Glycerolipid metabolism cfir00562   Inositol phosphate metabolism cfir00564   Glycerophospholipid metabolism cfir00592   alpha-Linolenic acid metabolism cfir00620   Pyruvate metabolism cfir00621   Dioxin degradation cfir00622   Xylene degradation cfir00625   Chloroalkane and chloroalkene degradation cfir00626   Naphthalene degradation cfir00627   Aminobenzoate degradation cfir00630   Glyoxylate and dicarboxylate metabolism cfir00640   Propanoate metabolism cfir00643   Styrene degradation cfir00650   Butanoate metabolism cfir00660   C5-Branched dibasic acid metabolism cfir00670   One carbon pool by folate cfir00680   Methane metabolism cfir00730   Thiamine metabolism cfir00740   Riboflavin metabolism cfir00750   Vitamin B6 metabolism cfir00760   Nicotinate and nicotinamide metabolism cfir00770   Pantothenate and CoA biosynthesis cfir00780   Biotin metabolism cfir00785   Lipoic acid metabolism cfir00790   Folate biosynthesis cfir00860   Porphyrin metabolism cfir00900   Terpenoid backbone biosynthesis cfir00907   Pinene, camphor and geraniol degradation cfir00910   Nitrogen metabolism cfir00920   Sulfur metabolism cfir00930   Caprolactam degradation cfir00999   Biosynthesis of various plant secondary metabolites cfir01040   Biosynthesis of unsaturated fatty acids cfir01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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