KEGG   PATHWAY: cfir00030
Entry
cfir00030                   Pathway                                
Name
Pentose phosphate pathway - Cytobacillus firmus
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfir00030  Pentose phosphate pathway
cfir00030

Module
cfir_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cfir00030]
cfir_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:cfir00030]
cfir_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cfir00030]
cfir_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cfir00030]
cfir_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:cfir00030]
cfir_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:cfir00030]
Other DBs
GO: 0006098
Organism
Cytobacillus firmus [GN:cfir]
Gene
NAF01_21070  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
NAF01_18100  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
NAF01_04775  lactonase family protein [KO:K07404] [EC:3.1.1.31]
NAF01_18105  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
NAF01_24520  gnd; decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
NAF01_08955  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
NAF01_09745  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
NAF01_23965  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
NAF01_02085  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
NAF01_23875  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
NAF01_02050  orotidine 5'-phosphate decarboxylase [KO:K08093] [EC:4.1.2.43]
NAF01_14215  hxlA; 3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
NAF01_02055  hxlB; 6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
NAF01_14220  hxlB; 6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
NAF01_18860  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
NAF01_17945  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
NAF01_23470  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
NAF01_06200  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
NAF01_22835  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
NAF01_00310  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
NAF01_02060  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NAF01_22320  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NAF01_10160  glucose-1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
NAF01_05115  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
NAF01_05120  gluconate 2-dehydrogenase subunit 3 family protein [KO:K06152] [EC:1.1.99.3]
NAF01_24510  gntK; gluconokinase [KO:K25031] [EC:2.7.1.12]
NAF01_02045  sugar kinase [KO:K00874] [EC:2.7.1.45]
NAF01_22325  sugar kinase [KO:K00874] [EC:2.7.1.45]
NAF01_23970  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
NAF01_23955  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
NAF01_19960  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
cfir00010  Glycolysis / Gluconeogenesis
cfir00040  Pentose and glucuronate interconversions
cfir00052  Galactose metabolism
cfir00230  Purine metabolism
cfir00240  Pyrimidine metabolism
cfir00340  Histidine metabolism
cfir00630  Glyoxylate and dicarboxylate metabolism
cfir00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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