KEGG   PATHWAY: cfl00020
Entry
cfl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cellulomonas flavigena
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfl00020  Citrate cycle (TCA cycle)
cfl00020

Module
cfl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cfl00020]
cfl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfl00020]
cfl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cfl00020]
cfl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfl00020]
Other DBs
GO: 0006099
Organism
Cellulomonas flavigena [GN:cfl]
Gene
Cfla_0995  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Cfla_1712  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Cfla_2528  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Cfla_1219  2-oxoglutarate dehydrogenase, E1 subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Cfla_2100  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Cfla_2536  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Cfla_2537  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Cfla_1917  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Cfla_1015  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Cfla_1916  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Cfla_1014  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Cfla_1918  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Cfla_1017  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Cfla_1016  succinate dehydrogenase hydrophobic anchor subunit-like protein [KO:K00242]
Cfla_0959  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Cfla_2522  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Cfla_1908  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Cfla_0476  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Cfla_2147  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Cfla_2101  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cfl00010  Glycolysis / Gluconeogenesis
cfl00053  Ascorbate and aldarate metabolism
cfl00061  Fatty acid biosynthesis
cfl00071  Fatty acid degradation
cfl00190  Oxidative phosphorylation
cfl00220  Arginine biosynthesis
cfl00250  Alanine, aspartate and glutamate metabolism
cfl00280  Valine, leucine and isoleucine degradation
cfl00350  Tyrosine metabolism
cfl00470  D-Amino acid metabolism
cfl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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