KEGG   PATHWAY: cgig00020
Entry
cgig00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Colletes gigas
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cgig00020  Citrate cycle (TCA cycle)
cgig00020

Module
cgig_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cgig00020]
cgig_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cgig00020]
cgig_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cgig00020]
cgig_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cgig00020]
cgig_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cgig00020]
Other DBs
GO: 0006099
Organism
Colletes gigas [GN:cgig]
Gene
122401802  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
122404801  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
122400811  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
122405413  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
122396829  aconitate hydratase, mitochondrial-like isoform X1 [KO:K01681] [EC:4.2.1.3]
122404921  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
122399950  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
122403317  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
122403471  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
122401148  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122398485  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
122399197  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
122395990  dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
122404659  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122405542  LOW QUALITY PROTEIN: succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122405544  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122396216  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122398491  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
122398495  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
122400705  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
122398389  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
122400297  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
122402166  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
122400475  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
122400343  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
122396577  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
122397732  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
122405345  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122396540  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122397455  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122403347  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
122398501  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
122394974  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
122395655  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
122399339  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
122397868  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
122401541  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
122404475  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cgig00010  Glycolysis / Gluconeogenesis
cgig00053  Ascorbate and aldarate metabolism
cgig00061  Fatty acid biosynthesis
cgig00062  Fatty acid elongation
cgig00071  Fatty acid degradation
cgig00190  Oxidative phosphorylation
cgig00220  Arginine biosynthesis
cgig00250  Alanine, aspartate and glutamate metabolism
cgig00280  Valine, leucine and isoleucine degradation
cgig00350  Tyrosine metabolism
cgig00470  D-Amino acid metabolism
cgig00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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