KEGG   PATHWAY: chb00020
Entry
chb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chlamydia psittaci 6BC
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chb00020  Citrate cycle (TCA cycle)
chb00020

Module
chb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:chb00020]
chb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chb00020]
Other DBs
GO: 0006099
Organism
Chlamydia psittaci 6BC [GN:chb]
Gene
G5O_0450  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
G5O_0451  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
G5O_0248  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase, putative [KO:K00658] [EC:2.3.1.61]
G5O_0982  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
G5O_0824  succinyl-Coa synthetase, alpha chain [KO:K01902] [EC:6.2.1.5]
G5O_0825  succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
G5O_1019  frdA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
G5O_1018  succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
G5O_1020  succinate dehydrogenase subunit C [KO:K00241]
G5O_0784  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
G5O_0769  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
G5O_0963  Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
G5O_0514  pyruvate dehydrogenase, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
G5O_0513  pdhB; pyruvate dehydrogenase, E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
G5O_0512  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chb00010  Glycolysis / Gluconeogenesis
chb00061  Fatty acid biosynthesis
chb00190  Oxidative phosphorylation
chb00250  Alanine, aspartate and glutamate metabolism
chb00280  Valine, leucine and isoleucine degradation
chb00470  D-Amino acid metabolism
chb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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