KEGG   PATHWAY: chor00020
Entry
chor00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chitinophaga horti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chor00020  Citrate cycle (TCA cycle)
chor00020

Module
chor_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:chor00020]
chor_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:chor00020]
chor_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:chor00020]
chor_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:chor00020]
chor_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chor00020]
Other DBs
GO: 0006099
Organism
Chitinophaga horti [GN:chor]
Gene
MKQ68_00395  citrate (Si)-synthase, eukaryotic [KO:K01647] [EC:2.3.3.1]
MKQ68_15515  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MKQ68_16190  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MKQ68_16195  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MKQ68_17175  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MKQ68_14560  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
MKQ68_17170  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MKQ68_03855  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MKQ68_19670  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MKQ68_20595  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MKQ68_19405  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MKQ68_16280  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MKQ68_09655  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
MKQ68_15925  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MKQ68_15920  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MKQ68_15930  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MKQ68_24255  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MKQ68_01230  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MKQ68_03340  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MKQ68_08600  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MKQ68_00210  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MKQ68_08515  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MKQ68_14730  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MKQ68_18235  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chor00010  Glycolysis / Gluconeogenesis
chor00053  Ascorbate and aldarate metabolism
chor00061  Fatty acid biosynthesis
chor00071  Fatty acid degradation
chor00190  Oxidative phosphorylation
chor00220  Arginine biosynthesis
chor00250  Alanine, aspartate and glutamate metabolism
chor00280  Valine, leucine and isoleucine degradation
chor00350  Tyrosine metabolism
chor00470  D-Amino acid metabolism
chor00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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