KEGG   PATHWAY: chrc00020
Entry
chrc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chryseobacterium sp. wdc7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chrc00020  Citrate cycle (TCA cycle)
chrc00020

Module
chrc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:chrc00020]
chrc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:chrc00020]
chrc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:chrc00020]
chrc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:chrc00020]
chrc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chrc00020]
Other DBs
GO: 0006099
Organism
Chryseobacterium sp. wdc7 [GN:chrc]
Gene
QGN23_11825  citrate synthase [KO:K01647] [EC:2.3.3.1]
QGN23_03250  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QGN23_09035  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
QGN23_03515  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QGN23_05100  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QGN23_01925  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
QGN23_05090  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QGN23_03275  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QGN23_05345  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QGN23_07820  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QGN23_11640  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QGN23_11910  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QGN23_11915  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QGN23_11905  succinate dehydrogenase cytochrome b subunit [KO:K00241]
QGN23_09530  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
QGN23_09520  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QGN23_12915  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QGN23_00830  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QGN23_08540  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
QGN23_03040  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QGN23_14540  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
QGN23_03035  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chrc00010  Glycolysis / Gluconeogenesis
chrc00053  Ascorbate and aldarate metabolism
chrc00061  Fatty acid biosynthesis
chrc00071  Fatty acid degradation
chrc00190  Oxidative phosphorylation
chrc00220  Arginine biosynthesis
chrc00250  Alanine, aspartate and glutamate metabolism
chrc00280  Valine, leucine and isoleucine degradation
chrc00350  Tyrosine metabolism
chrc00470  D-Amino acid metabolism
chrc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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