KEGG   PATHWAY: cid00020
Entry
cid00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Celeribacter indicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cid00020  Citrate cycle (TCA cycle)
cid00020

Module
cid_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cid00020]
cid_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cid00020]
cid_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cid00020]
cid_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cid00020]
cid_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cid00020]
Other DBs
GO: 0006099
Organism
Celeribacter indicus [GN:cid]
Gene
P73_1585  citrate synthase [KO:K01647] [EC:2.3.3.1]
P73_1633  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
P73_1481  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
P73_2209  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
P73_3874  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
P73_3875  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
P73_3879  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
P73_1614  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
P73_3873  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
P73_3872  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
P73_1301  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
P73_3862  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
P73_3860  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
P73_3864  succinate dehydrogenase subunit C [KO:K00241]
P73_3863  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
P73_2498  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
P73_3870  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
P73_3225  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
P73_0614  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
P73_1704  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
P73_1703  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
P73_1702  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cid00010  Glycolysis / Gluconeogenesis
cid00053  Ascorbate and aldarate metabolism
cid00061  Fatty acid biosynthesis
cid00071  Fatty acid degradation
cid00190  Oxidative phosphorylation
cid00220  Arginine biosynthesis
cid00250  Alanine, aspartate and glutamate metabolism
cid00280  Valine, leucine and isoleucine degradation
cid00350  Tyrosine metabolism
cid00470  D-Amino acid metabolism
cid00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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