KEGG   PATHWAY: cide00020
Entry
cide00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Ctenopharyngodon idella (grass carp)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cide00020  Citrate cycle (TCA cycle)
cide00020

Module
cide_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cide00020]
cide_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cide00020]
cide_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cide00020]
cide_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cide00020]
cide_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cide00020]
Other DBs
GO: 0006099
Organism
Ctenopharyngodon idella (grass carp) [GN:cide]
Gene
127504453  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
127509097  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
127523944  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
127515593  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
127523746  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
127499566  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
127518453  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
127506996  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
127503387  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
127504537  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
127505512  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
127521734  2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
127517591  oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
127525429  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
127498047  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
127507420  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
127514974  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
127514735  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127522317  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127500649  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
127521355  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
127505350  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
127495966  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
127495969  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
127512567  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial [KO:K00237]
127523204  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
127521393  malate dehydrogenase 1Aa, NAD (soluble) isoform X1 [KO:K00025] [EC:1.1.1.37]
127498144  malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
127521451  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
127516207  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
127504065  pyruvate carboxylase a [KO:K01958] [EC:6.4.1.1]
127506370  phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
127514725  phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
127512181  pyruvate dehydrogenase E1 subunit alpha 1a isoform X1 [KO:K00161] [EC:1.2.4.1]
127505801  pyruvate dehydrogenase E1 subunit alpha 1b isoform X1 [KO:K00161] [EC:1.2.4.1]
127521090  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
127503261  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cide00010  Glycolysis / Gluconeogenesis
cide00053  Ascorbate and aldarate metabolism
cide00061  Fatty acid biosynthesis
cide00062  Fatty acid elongation
cide00071  Fatty acid degradation
cide00190  Oxidative phosphorylation
cide00220  Arginine biosynthesis
cide00250  Alanine, aspartate and glutamate metabolism
cide00280  Valine, leucine and isoleucine degradation
cide00350  Tyrosine metabolism
cide00470  D-Amino acid metabolism
cide00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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