KEGG   PATHWAY: cill00020
Entry
cill00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Carya illinoinensis (pecan)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cill00020  Citrate cycle (TCA cycle)
cill00020

Module
cill_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cill00020]
cill_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cill00020]
cill_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cill00020]
Other DBs
GO: 0006099
Organism
Carya illinoinensis (pecan) [GN:cill]
Gene
122299187  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
122304182  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
122307617  citrate synthase, glyoxysomal-like isoform X1 [KO:K01647] [EC:2.3.3.1]
122311727  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
122312385  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
122300359  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
122317367  ATP-citrate synthase alpha chain protein 3 isoform X1 [KO:K01648] [EC:2.3.3.8]
122317968  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
122274225  ATP-citrate synthase alpha chain protein 3-like [KO:K01648] [EC:2.3.3.8]
122281497  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
122315938  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
122303810  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
122307351  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
122296347  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
122302610  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
122302956  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
122307148  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
122276278  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
122309835  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
122279951  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
122315714  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
122301383  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
122290449  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122282869  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
122303796  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
122276010  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
122300334  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
122317458  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
122318151  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
122299455  succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122305369  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122306056  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122297022  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
122307505  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
122307371  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122307638  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122316823  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
122277016  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
122300681  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
122292290  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
122280792  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122281637  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
122316792  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
122289519  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122319374  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
122315877  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
122317232  phosphoenolpyruvate carboxykinase (ATP) 1-like isoform X1 [KO:K01610] [EC:4.1.1.49]
122317952  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
122309903  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
122311960  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
122313795  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
122276374  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
122278425  LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
122311739  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
122312955  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
122296324  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
122299343  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
122299442  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
122281143  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
122300938  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
122290880  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cill00010  Glycolysis / Gluconeogenesis
cill00053  Ascorbate and aldarate metabolism
cill00061  Fatty acid biosynthesis
cill00062  Fatty acid elongation
cill00071  Fatty acid degradation
cill00190  Oxidative phosphorylation
cill00220  Arginine biosynthesis
cill00250  Alanine, aspartate and glutamate metabolism
cill00280  Valine, leucine and isoleucine degradation
cill00350  Tyrosine metabolism
cill00470  D-Amino acid metabolism
cill00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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