KEGG   PATHWAY: cit00020
Entry
cit00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Citrus sinensis (Valencia orange)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cit00020  Citrate cycle (TCA cycle)
cit00020

Module
cit_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cit00020]
cit_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cit00020]
cit_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cit00020]
Other DBs
GO: 0006099
Organism
Citrus sinensis (Valencia orange) [GN:cit]
Gene
102577950  citrate synthase isoform X1 [KO:K01647] [EC:2.3.3.1]
102629069  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
102626909  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
102608248  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
102618571  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
102578038  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
102609713  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
102628904  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
102629733  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [KO:K00031] [EC:1.1.1.42]
102609279  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
102618681  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
102626057  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
102619899  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
102577933  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
102623642  uncharacterized protein LOC102623642 [KO:K00164] [EC:1.2.4.2]
102608742  uncharacterized protein LOC102608742 [KO:K00164] [EC:1.2.4.2]
102622253  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
102630813  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
102624649  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
102627107  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
102628853  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102611057  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102626700  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102623970  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
102626819  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
102624270  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
36487033  sdh4; succinate dehydrogenase subunit 4 [KO:K25801]
102617393  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
102615934  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
102577998  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
102608370  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
102628532  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
102617795  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102622394  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
102629129  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
102623813  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
102613187  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
102622026  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic isoform X1 [KO:K00161] [EC:1.2.4.1]
102610434  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
102608638  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
102619741  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
102627250  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
102607666  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
102609118  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
102629198  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cit00010  Glycolysis / Gluconeogenesis
cit00053  Ascorbate and aldarate metabolism
cit00061  Fatty acid biosynthesis
cit00062  Fatty acid elongation
cit00071  Fatty acid degradation
cit00190  Oxidative phosphorylation
cit00220  Arginine biosynthesis
cit00250  Alanine, aspartate and glutamate metabolism
cit00280  Valine, leucine and isoleucine degradation
cit00350  Tyrosine metabolism
cit00470  D-Amino acid metabolism
cit00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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