KEGG   PATHWAY: clu03008
Entry
clu03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Clavispora lusitaniae ATCC 42720
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
clu03008  Ribosome biogenesis in eukaryotes
clu03008

Organism
Clavispora lusitaniae ATCC 42720 [GN:clu]
Gene
CLUG_00780  hypothetical protein [KO:K03115]
CLUG_03774  hypothetical protein [KO:K03115]
CLUG_02275  similar to kinase [KO:K03097] [EC:2.7.11.1]
CLUG_00914  hypothetical protein [KO:K03097] [EC:2.7.11.1]
CLUG_00910  hypothetical protein [KO:K14544]
CLUG_04529  hypothetical protein [KO:K14545]
CLUG_00883  hypothetical protein [KO:K14546]
CLUG_04056  hypothetical protein [KO:K14547]
CLUG_02675  hypothetical protein [KO:K14548]
CLUG_03127  hypothetical protein [KO:K14549]
CLUG_00025  hypothetical protein [KO:K14550]
CLUG_00026  hypothetical protein [KO:K14550]
CLUG_02264  hypothetical protein [KO:K14551]
CLUG_05365  hypothetical protein [KO:K14552]
CLUG_05706  hypothetical protein [KO:K14553]
CLUG_00142  hypothetical protein [KO:K14554]
CLUG_01646  hypothetical protein [KO:K14555]
CLUG_00165  hypothetical protein [KO:K14556]
CLUG_01937  hypothetical protein [KO:K14557]
CLUG_03654  hypothetical protein [KO:K14558]
CLUG_00827  hypothetical protein [KO:K14559]
CLUG_04346  hypothetical protein [KO:K14560]
CLUG_04777  hypothetical protein [KO:K14561]
CLUG_03751  similar to NOP1 [KO:K14563] [EC:2.1.1.-]
CLUG_05764  hypothetical protein [KO:K14564]
CLUG_00761  hypothetical protein [KO:K14565]
CLUG_05499  hypothetical protein [KO:K12845]
CLUG_05058  centromere/microtubule binding protein CBF5 [KO:K11131] [EC:5.4.99.-]
CLUG_03310  hypothetical protein [KO:K11129]
CLUG_05912  hypothetical protein [KO:K11128]
CLUG_01481  ribosome biogenesis protein Nop10 [KO:K11130]
CLUG_03623  hypothetical protein [KO:K14566]
CLUG_02183  hypothetical protein [KO:K14567]
CLUG_04049  hypothetical protein [KO:K03685] [EC:3.1.26.3]
CLUG_02149  nucleolar essential protein 1 [KO:K14568] [EC:2.1.1.260]
CLUG_02648  hypothetical protein [KO:K14569]
CLUG_05632  hypothetical protein [KO:K14521] [EC:2.3.1.-]
CLUG_04623  hypothetical protein [KO:K11108]
CLUG_00293  hypothetical protein [KO:K01164] [EC:3.1.26.5]
CLUG_03465  hypothetical protein [KO:K14522] [EC:3.1.26.5]
CLUG_05308  hypothetical protein [KO:K03538] [EC:3.1.26.5]
CLUG_02383  hypothetical protein [KO:K03537] [EC:3.1.26.5]
CLUG_01782  hypothetical protein [KO:K14526] [EC:3.1.26.5]
CLUG_00934  hypothetical protein [KO:K03539] [EC:3.1.26.5]
CLUG_04682  hypothetical protein [KO:K14532]
CLUG_04084  hypothetical protein [KO:K14570] [EC:3.1.-.-]
CLUG_04825  hypothetical protein [KO:K14570] [EC:3.1.-.-]
CLUG_04431  hypothetical protein [KO:K13288] [EC:3.1.-.-]
CLUG_00073  hypothetical protein [KO:K12618] [EC:3.1.13.-]
CLUG_03973  hypothetical protein [KO:K12619] [EC:3.1.13.-]
CLUG_03974  hypothetical protein [KO:K12619] [EC:3.1.13.-]
CLUG_02023  hypothetical protein [KO:K06943]
CLUG_01026  hypothetical protein [KO:K14537]
CLUG_01027  hypothetical protein [KO:K14537]
CLUG_01051  hypothetical protein [KO:K14538]
CLUG_01367  hypothetical protein [KO:K14571]
CLUG_04817  hypothetical protein [KO:K14572]
CLUG_04815  hypothetical protein [KO:K14572]
CLUG_01419  hypothetical protein [KO:K14573]
CLUG_03149  hypothetical protein [KO:K11883]
CLUG_03809  casein kinase I [KO:K14758] [EC:2.7.11.1]
CLUG_01626  GTP-binding nuclear protein GSP1/Ran [KO:K07936]
CLUG_04355  similar to nuclear export factor CRM1 [KO:K14290]
CLUG_02478  hypothetical protein [KO:K07562]
CLUG_03708  hypothetical protein [KO:K14284]
CLUG_01500  eukaryotic translation initiation factor 6 [KO:K03264]
CLUG_05031  hypothetical protein [KO:K14574]
CLUG_04082  similar to translation elongation factor 4 [KO:K14536] [EC:3.6.5.-]
CLUG_03141  hypothetical protein [KO:K14539] [EC:3.6.1.-]
CLUG_02836  hypothetical protein [KO:K14575]
CLUG_04137  hypothetical protein [KO:K18532] [EC:2.7.4.3]
CLUG_01930  hypothetical protein [KO:K07178] [EC:2.7.11.1]
CLUG_02822  hypothetical protein [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
clu03010  Ribosome
KO pathway
ko03008   
LinkDB

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