KEGG   PATHWAY: cmag00020
Entry
cmag00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pacificitalea manganoxidans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmag00020  Citrate cycle (TCA cycle)
cmag00020

Module
cmag_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cmag00020]
cmag_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cmag00020]
cmag_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cmag00020]
cmag_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cmag00020]
cmag_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmag00020]
Other DBs
GO: 0006099
Organism
Pacificitalea manganoxidans [GN:cmag]
Gene
CBW24_07355  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CBW24_09335  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CBW24_09455  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CBW24_07410  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CBW24_13115  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CBW24_13120  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CBW24_09230  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CBW24_08370  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CBW24_13135  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CBW24_13110  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CBW24_13100  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CBW24_13055  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CBW24_13035  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CBW24_13065  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CBW24_13060  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CBW24_11235  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CBW24_13090  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CBW24_04940  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CBW24_02785  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CBW24_10355  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CBW24_10350  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CBW24_10345  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmag00010  Glycolysis / Gluconeogenesis
cmag00053  Ascorbate and aldarate metabolism
cmag00061  Fatty acid biosynthesis
cmag00071  Fatty acid degradation
cmag00190  Oxidative phosphorylation
cmag00220  Arginine biosynthesis
cmag00250  Alanine, aspartate and glutamate metabolism
cmag00280  Valine, leucine and isoleucine degradation
cmag00350  Tyrosine metabolism
cmag00470  D-Amino acid metabolism
cmag00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system