KEGG   PATHWAY: cme00020
Entry
cme00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cyanidioschyzon merolae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cme00020  Citrate cycle (TCA cycle)
cme00020

Module
cme_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cme00020]
cme_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cme00020]
cme_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cme00020]
Other DBs
GO: 0006099
Organism
Cyanidioschyzon merolae [GN:cme]
Gene
CYME_CMJ293C  citrate synthase [KO:K01647] [EC:2.3.3.1]
CYME_CMQ191C  citrate synthase, mitochondrial precursor [KO:K01647] [EC:2.3.3.1]
CYME_CMA040C  citrate synthase [KO:K01647] [EC:2.3.3.1]
CYME_CMM068C  citrate synthase [KO:K01647] [EC:2.3.3.1]
CYME_CMB128C  ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
CYME_CMB118C  ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
CYME_CMT561C  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CYME_CMT216C  isocitrate dehydrogenase, cytosolic [KO:K00031] [EC:1.1.1.42]
CYME_CMS272C  isocitrate dehydrogenase subunit 2, mitochondrial precursor [KO:K00030] [EC:1.1.1.41]
CYME_CMT412C  isocitrate dehydrogenase subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
CYME_CMF068C  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
CYME_CMJ055C  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
CYME_CMQ234C  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CYME_CMM299C  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CYME_CMH132C  succinyl-CoA synthetase alpha chain [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CYME_CMT209C  succinate--CoA ligase, mitochondrial precursor [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CYME_CMT582C  succinate dehydrogenase flavoprotein subunit precursor [KO:K00234] [EC:1.3.5.1]
CYME_CMD058C  fumarate hydratase precursor [KO:K01679] [EC:4.2.1.2]
CYME_CMP193C  malate dehydrogenase, mitochondrial precursor [KO:K00025] [EC:1.1.1.37]
CYME_CMT611C  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
CYME_CMN285C  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CYME_CMT256C  pyruvate dehydrogenase E1 alpha subunit, mitochondrial precursor [KO:K00161] [EC:1.2.4.1]
CYME_CMS327C  pyruvate dehydrogenase E1 beta subunit, mitochondrial precursor [KO:K00162] [EC:1.2.4.1]
CymeCp128  odpB; pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
CYME_CMN017C  dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
CYME_CMI273C  dihydrolipoamide S-acetyltransferase, precursor [KO:K00627] [EC:2.3.1.12]
CYME_CMN233C  dihydrolipoamide S-acetyltransferase, chloroplast precursor [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cme00010  Glycolysis / Gluconeogenesis
cme00053  Ascorbate and aldarate metabolism
cme00061  Fatty acid biosynthesis
cme00062  Fatty acid elongation
cme00071  Fatty acid degradation
cme00190  Oxidative phosphorylation
cme00220  Arginine biosynthesis
cme00250  Alanine, aspartate and glutamate metabolism
cme00280  Valine, leucine and isoleucine degradation
cme00350  Tyrosine metabolism
cme00470  D-Amino acid metabolism
cme00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system