KEGG   PATHWAY: cmin00020
Entry
cmin00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium minutissimum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmin00020  Citrate cycle (TCA cycle)
cmin00020

Module
cmin_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cmin00020]
cmin_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cmin00020]
cmin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cmin00020]
cmin_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cmin00020]
cmin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmin00020]
Other DBs
GO: 0006099
Organism
Corynebacterium minutissimum [GN:cmin]
Gene
NCTC10288_01768  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC10288_01290  acn; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NCTC10288_02019  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NCTC10288_01533  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NCTC10288_02272  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC10288_00420  cat1_1; succinyl-CoA:Coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
NCTC10288_02267  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC10288_02266  sdhB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC10288_02268  sdhC; Succinate dehydrogenase subunit [KO:K00241]
NCTC10288_01608  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NCTC10288_00559  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC10288_00938  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NCTC10288_01997  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NCTC10288_00207  pck; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
NCTC10288_00732  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
NCTC10288_00770  aceF; Dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmin00010  Glycolysis / Gluconeogenesis
cmin00053  Ascorbate and aldarate metabolism
cmin00061  Fatty acid biosynthesis
cmin00071  Fatty acid degradation
cmin00190  Oxidative phosphorylation
cmin00220  Arginine biosynthesis
cmin00250  Alanine, aspartate and glutamate metabolism
cmin00280  Valine, leucine and isoleucine degradation
cmin00350  Tyrosine metabolism
cmin00470  D-Amino acid metabolism
cmin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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