KEGG   PATHWAY: cmn00020
Entry
cmn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chlamydia muridarum Nigg 2 MCR
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmn00020  Citrate cycle (TCA cycle)
cmn00020

Module
cmn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cmn00020]
cmn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmn00020]
Other DBs
GO: 0006099
Organism
Chlamydia muridarum Nigg 2 MCR [GN:cmn]
Gene
BB17_01740  MFS transporter [KO:K00164] [EC:1.2.4.2]
BB17_03625  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
BB17_01745  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
BB17_04540  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BB17_01120  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
BB17_01115  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BB17_04725  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
BB17_04720  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
BB17_04730  succinate dehydrogenase [KO:K00241]
BB17_01315  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BB17_03495  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BB17_00460  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BB17_02780  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
BB17_02785  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
BB17_02790  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmn00010  Glycolysis / Gluconeogenesis
cmn00061  Fatty acid biosynthesis
cmn00190  Oxidative phosphorylation
cmn00250  Alanine, aspartate and glutamate metabolism
cmn00280  Valine, leucine and isoleucine degradation
cmn00470  D-Amino acid metabolism
cmn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system